Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_E12
         (474 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    27   1.9  
SPAC8E11.07c |alp31||tubulin specific chaperone cofactor A |Schi...    26   3.4  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    25   4.5  
SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr 3|...    25   4.5  
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    25   5.9  
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces...    25   7.8  

>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 47  SPLEYSPALSPTHRQHTHHLAKSDVEASEVHKSRH 151
           SPL+ +P  SP  ++HT       V AS  HK  H
Sbjct: 86  SPLQ-TPQKSPPRQKHTAPATPIPVSASRHHKPHH 119


>SPAC8E11.07c |alp31||tubulin specific chaperone cofactor A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 16/68 (23%), Positives = 33/68 (48%)
 Frame = +2

Query: 101 HLAKSDVEASEVHKSRHVSQLAELDHELSKISLHYKHAPPKAVFIQHSAEEHDLLSSDTD 280
           H+  ++ E     K  +    AE++H+   +  H +  P   V ++++  + + +SSD  
Sbjct: 26  HIDINEAEKRVQSKIDNGEDSAEIEHQKFVLKKHLEALPDALVRLRNATNDLESISSD-- 83

Query: 281 TPVNAYEG 304
              +AYEG
Sbjct: 84  ---SAYEG 88


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +2

Query: 143 SRHVSQLAELDHELSKISLHYKHAPPKAVFIQHSAEEHDL---LSSDTDTPVNAYEGEVG 313
           S H   + +L+H     SL    +   +V  Q+  +E+     +S++ D  +N Y  E+ 
Sbjct: 181 SSHNIHIVDLNHRNPIDSLTTHTSMINSVVFQYLKDENKFYFGVSANQDRFINLYSKELD 240

Query: 314 GAGRF 328
           G G F
Sbjct: 241 GTGEF 245


>SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +2

Query: 251 EHDLLSSDTDTPVNAYEGEVGGAGRFVV 334
           EH LL      PVN     V   GRF+V
Sbjct: 147 EHGLLRKQLHFPVNMNHASVSNDGRFMV 174


>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 188 KISLHYKHAPPKAVFIQHSAEEHDLLSSDTDTPV 289
           K +L Y+H  P       SAEE   L S+TDT +
Sbjct: 279 KATLDYEHTVPFPTSSWLSAEERLHLLSNTDTEI 312


>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 316

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 218 PKAVFIQHSAEEHDLLSSDTDTPV 289
           P   F++H +  HD L+S   TP+
Sbjct: 257 PIDTFLEHRSSSHDHLTSTPRTPI 280


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,149,436
Number of Sequences: 5004
Number of extensions: 18770
Number of successful extensions: 82
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)