Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_E12
(474 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0627 - 20061951-20062391,20062912-20062960,20063386-200638... 32 0.27
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117... 30 0.83
06_03_0969 - 26413534-26413594,26415020-26415318 30 1.1
02_05_0106 - 25877997-25878677,25878951-25879222,25879317-25879476 29 1.4
04_04_1555 + 34376612-34376887,34377306-34377450,34377891-343780... 29 2.5
11_06_0536 + 24750533-24750818,24752950-24753018,24753214-24753239 28 3.3
03_06_0599 + 34984869-34985319,34986581-34987563 28 3.3
10_06_0138 + 11136687-11137022 28 4.4
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 28 4.4
03_06_0428 + 33860982-33861321,33861410-33861999,33862520-33862582 28 4.4
11_01_0435 + 3337840-3338494,3338950-3339313,3339733-3340009 27 5.8
07_01_0172 - 1201595-1201912,1202637-1202723,1202836-1202895,120... 27 5.8
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 27 5.8
>07_03_0627 -
20061951-20062391,20062912-20062960,20063386-20063851,
20063933-20064139,20064267-20064405,20065146-20065282,
20065414-20065657,20065808-20065969,20066049-20066167,
20066240-20066314,20066327-20066500,20066607-20066769,
20067211-20067420,20067515-20067668,20067761-20067839,
20067999-20068146,20068501-20068671,20068771-20069385
Length = 1250
Score = 31.9 bits (69), Expect = 0.27
Identities = 18/76 (23%), Positives = 38/76 (50%)
Frame = +2
Query: 44 GSPLEYSPALSPTHRQHTHHLAKSDVEASEVHKSRHVSQLAELDHELSKISLHYKHAPPK 223
G+PLE+ P + P H + HL +++ + R V+ E ++ ++ +K +
Sbjct: 350 GNPLEFLPEILPLH--NLRHLTLANIRIEALESLRSVTVQIETENNSYFVAARHKLSAFF 407
Query: 224 AVFIQHSAEEHDLLSS 271
++ + S+ H LL+S
Sbjct: 408 SLVFRFSSCHHPLLAS 423
>01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,
1171148-1171398,1171442-1171687,1172220-1172415,
1172796-1172876,1172966-1173169,1173671-1173880,
1173953-1174174,1174437-1174480,1174974-1175052,
1175066-1175227,1175337-1175564,1175786-1175815,
1175905-1176273,1176356-1176571,1177202-1177683,
1177930-1177975
Length = 1352
Score = 30.3 bits (65), Expect = 0.83
Identities = 16/64 (25%), Positives = 28/64 (43%)
Frame = +2
Query: 20 SNSGPVSPGSPLEYSPALSPTHRQHTHHLAKSDVEASEVHKSRHVSQLAELDHELSKISL 199
++S GS E R+H H ++SD +AS+ + ++ DH S+
Sbjct: 1180 TDSDEYDSGSEEENRRKKRSHRRKHRRHSSRSDSDASDYSSDDEERRSSKKDHSSSRSHR 1239
Query: 200 HYKH 211
H+ H
Sbjct: 1240 HHHH 1243
Score = 27.1 bits (57), Expect = 7.7
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +2
Query: 74 SPTHRQHTHHLAKSDV--EASEVHKSRHVSQLAELDHELSKISLHYKH 211
S +HR H H + D E+ E +SRH D + + S ++KH
Sbjct: 1235 SRSHRHHHHRSSGDDSGSESEERGRSRHKKHHRSSDEDATSDSNNHKH 1282
>06_03_0969 - 26413534-26413594,26415020-26415318
Length = 119
Score = 29.9 bits (64), Expect = 1.1
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Frame = +1
Query: 25 QRSGVSRLSARVQSSVVANASTAHASFG*V*RRGERG--A*VPPRVA----ASGAGPRAQ 186
+RS +R +AR +S A S A A+ RR RG A PP A A GP+AQ
Sbjct: 36 RRSRAARATARWRSRAAAQGSPAAAA-----RRRSRGTQARRPPAAARRPPAMARGPQAQ 90
Query: 187 QDQPPLQARAA 219
+PP A+ +
Sbjct: 91 ARRPPAMAQGS 101
>02_05_0106 - 25877997-25878677,25878951-25879222,25879317-25879476
Length = 370
Score = 29.5 bits (63), Expect = 1.4
Identities = 22/86 (25%), Positives = 35/86 (40%)
Frame = +2
Query: 59 YSPALSPTHRQHTHHLAKSDVEASEVHKSRHVSQLAELDHELSKISLHYKHAPPKAVFIQ 238
+ P LS + HH ++ ++ H QL ++ + K L Y H P+ F+Q
Sbjct: 181 FMPDLSSPRQLLPHHHHHHPGSSAALYHGHHHQQLQQM-YGHCKPELEYHHLLPQEAFLQ 239
Query: 239 HSAEEHDLLSSDTDTPVNAYEGEVGG 316
H + L S P A +GG
Sbjct: 240 HLPQ---LESPKPPPPPPAAAAYIGG 262
>04_04_1555 +
34376612-34376887,34377306-34377450,34377891-34378000,
34378121-34378418,34378591-34379006
Length = 414
Score = 28.7 bits (61), Expect = 2.5
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +2
Query: 248 EEHDLLSSDTDTPVNAYEGEVGGAGRFVVSRAA 346
+EH+++S +TP++ +G +G AG + + A
Sbjct: 304 DEHEMVSPGKETPISHSDGSIGHAGANLANSGA 336
>11_06_0536 + 24750533-24750818,24752950-24753018,24753214-24753239
Length = 126
Score = 28.3 bits (60), Expect = 3.3
Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = -2
Query: 218 AARACSGG*SC*ARGPAPLAATRGGTYA--PRSPLRQT*PNDACAVDALA 75
AA A GG A + GG A PR P R P DACA +A A
Sbjct: 8 AAAAAGGGVGRRAGCSGGVGRRAGGGVARRPRRPARGQRPGDACATEAAA 57
>03_06_0599 + 34984869-34985319,34986581-34987563
Length = 477
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 2 QWLASISNSGPVSPGSPLEYSPALSPTHRQHT 97
+W+++ S SGP P P P P H++ T
Sbjct: 386 RWVSTSSQSGPAPPPPPQPPPPPPPPPHQRET 417
>10_06_0138 + 11136687-11137022
Length = 111
Score = 27.9 bits (59), Expect = 4.4
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 121 RGERGA*VPPRVAASGAGPRAQQDQPPLQARAAQGR 228
RG RG+ R+AA G RA + +Q R QGR
Sbjct: 74 RGGRGSAAARRLAAKGQNRRAWRSAADVQGRWRQGR 109
>07_03_0481 -
18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 27.9 bits (59), Expect = 4.4
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +2
Query: 50 PLEYSPALSPTHRQHTHHLAKSDVEASEVHKSRHVSQLAELDHELS-KISLHYKHAPP 220
P+E SP +QH H D + SE K ++++ + D + SL + +PP
Sbjct: 194 PMELSPKKYKNKKQHNHR----DSKRSEAKKVQYLASDVDSDSSMEPSTSLEHSESPP 247
>03_06_0428 + 33860982-33861321,33861410-33861999,33862520-33862582
Length = 330
Score = 27.9 bits (59), Expect = 4.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 20 SNSGPVSPGSPLEYSPALSPTHRQHTHH 103
S S SPGSP +P+ +P H H H
Sbjct: 173 STSPSASPGSPPAATPSSAPRHDAHPAH 200
>11_01_0435 + 3337840-3338494,3338950-3339313,3339733-3340009
Length = 431
Score = 27.5 bits (58), Expect = 5.8
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = +2
Query: 266 SSDTDTPVNAYEGEVGG---AGRFVVSRAAPCAGYSLC 370
SS PV+A EG+ GG R +SR+ CAG S+C
Sbjct: 32 SSSRSQPVSAAEGKNGGKKEKRRSSISRSITCAG-SIC 68
>07_01_0172 -
1201595-1201912,1202637-1202723,1202836-1202895,
1203007-1203106,1203227-1203633,1204728-1204883,
1204981-1205106,1205503-1205572,1205679-1205767
Length = 470
Score = 27.5 bits (58), Expect = 5.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 33 RCLPALRSSTVQRCRQRIDSTRII 104
RCLP + VQRCRQ +++++
Sbjct: 424 RCLPESLRAAVQRCRQSRPASKVV 447
>04_04_1144 + 31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 27.5 bits (58), Expect = 5.8
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +2
Query: 107 AKSDVEASEVHKSRHVSQLAELDHELSKISLHYKH 211
++ +EA + H + Q++ L +L + +HYKH
Sbjct: 1670 SEDQLEAEQQHVAELEVQVSSLKQQLQETEIHYKH 1704
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,039,022
Number of Sequences: 37544
Number of extensions: 173202
Number of successful extensions: 940
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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