Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_E12
         (474 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              25   0.55 
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    25   0.55 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    25   0.55 
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   3.8  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   8.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.9  

>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 24.6 bits (51), Expect = 0.55
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 132 SLASTSDLAK*CVCCR 85
           S+AST+  +K C CCR
Sbjct: 80  SVASTTGFSKECYCCR 95


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 24.6 bits (51), Expect = 0.55
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 132 SLASTSDLAK*CVCCR 85
           S+AST+  +K C CCR
Sbjct: 80  SVASTTGFSKECYCCR 95


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 0.55
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 8   LASISNSGPVSPGSPLEYSPALSPTHRQHTHHL 106
           L++  +SG ++P SP  Y   +SP   +  H L
Sbjct: 310 LSTSGSSGILTPVSPYGYVKPISPEQEELIHRL 342


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 6/27 (22%), Positives = 16/27 (59%)
 Frame = +3

Query: 36  CLPALRSSTVQRCRQRIDSTRIIWLSL 116
           C P   +  +++C   +DS+ +I+ ++
Sbjct: 178 CFPRATNRDIKKCSYNMDSSYVIFSAM 204


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 176 GPAPLAATRGGTYAPRSPL 120
           G A LAA + G+Y P + L
Sbjct: 40  GYAKLAAIKSGSYIPGASL 58


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +2

Query: 11  ASISNSGPVSPGSPLEYSPALSPTHRQHTHH 103
           +++  S   SPG     +  L P++  H HH
Sbjct: 292 SALGRSACHSPGVYPSTAGFLPPSYHPHQHH 322


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,727
Number of Sequences: 438
Number of extensions: 1286
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)