Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_E07
(696 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 36 0.004
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 27 1.9
SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.9
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom... 27 1.9
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe... 27 3.4
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar... 26 4.5
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 26 4.5
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 26 5.9
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 26 5.9
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 25 7.8
>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 707
Score = 36.3 bits (80), Expect = 0.004
Identities = 23/96 (23%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Frame = +3
Query: 381 ENDNYKLDNTKVTLKM--VSEWQAELQSEGKIKLSTLITVIKAFNAAMLRVSSDDGTSQG 554
EN+ K + K+ L + +WQ L++ L+TL V++AF AA +++
Sbjct: 164 ENERLKSSSGKIVLTSDTIQQWQKLLETNHS--LTTLQKVVQAFKAAAFL--NEEEAEDL 219
Query: 555 EMKVEGSSVFNAVIQLCVVNLPGAVKKYLGVEQSGK 662
+ + S VFN ++ L + +P + ++ +++ K
Sbjct: 220 KYTISDSKVFNDLLLLAIQYVPKVLNYHVPIQEDAK 255
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/53 (20%), Positives = 25/53 (47%)
Frame = +3
Query: 366 DDSDFENDNYKLDNTKVTLKMVSEWQAELQSEGKIKLSTLITVIKAFNAAMLR 524
D S +D++K+D++ + + W+ K + + K +N A+L+
Sbjct: 319 DQSRVSSDSFKVDDSSAKMAAIDIWEGSQHIVSNDKALSWLVTDKPYNKAVLK 371
>SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 203
Score = 27.5 bits (58), Expect = 1.9
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = -1
Query: 243 LQENYRSLDLSSSIFPK--IFYDSQDLALHQSLMN 145
L+EN ++LSSSI P + DSQ L+Q+L N
Sbjct: 6 LKENTEIINLSSSIHPNRDSYLDSQSDPLNQNLYN 40
>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = -1
Query: 390 CHSRSHCHHYQPARLLVCVFSHHLHYCHSVCQIPDHH--WL 274
CH+ CH Y+P R + H H C + + DHH WL
Sbjct: 184 CHT---CHLYRPPR------ASHCHLCDNCVEYLDHHCIWL 215
>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 716
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 225 SLDLSSSIFPKIFYDSQDLALHQSLMNPAPALIG 124
+L S ++PK+F D +L +S + A AL G
Sbjct: 67 ALQTFSQVYPKLFIGENDRSLVESWVETASALAG 100
>SPAC13F5.06c |sec10||exocyst complex subunit
Sec10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 26.2 bits (55), Expect = 4.5
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +3
Query: 384 NDNYKLDNTKVTLKMVSEWQAELQSEGKIKLSTLITVIKAFNAAM 518
NDN + +T+ K +E E Q++G KLS++ IK+F A +
Sbjct: 19 NDNKGIPSTEFVEKF-AESLYETQNDGSKKLSSIDGSIKSFAACL 62
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +3
Query: 366 DDSDFENDNYKLDNTKVTLKMVSEWQAELQSEGKIKLSTLITVIKAFN 509
D FE L+N +K S + EL+ L TLI++ F+
Sbjct: 519 DTESFEKQRVALENASKLIKRKSAFGTELRDHADELLQTLISLQNRFD 566
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/42 (28%), Positives = 26/42 (61%)
Frame = +3
Query: 357 ADSDDSDFENDNYKLDNTKVTLKMVSEWQAELQSEGKIKLST 482
+DSD D EN + KLDN + + +++ + + +++ + LS+
Sbjct: 211 SDSDHDDGENSDSKLDNLRNYIVSLNQKRKKDEADAESVLSS 252
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/56 (25%), Positives = 22/56 (39%)
Frame = +3
Query: 360 DSDDSDFENDNYKLDNTKVTLKMVSEWQAELQSEGKIKLSTLITVIKAFNAAMLRV 527
+ DDSD N + K+T S W G K S L + + N ++ +
Sbjct: 401 EEDDSDEFNPSVSRKKAKLTSSQFSNWMLVTGVTGIGKTSCLYAICRELNFEVVEI 456
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 25.4 bits (53), Expect = 7.8
Identities = 8/16 (50%), Positives = 14/16 (87%)
Frame = +1
Query: 508 MQLCFELVVMMELHKE 555
M++CFEL+ M++ HK+
Sbjct: 940 MRICFELIDMLKAHKK 955
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,576,479
Number of Sequences: 5004
Number of extensions: 50099
Number of successful extensions: 162
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -