Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_E07
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0398 - 2858863-2859501,2859616-2859714,2859757-2859821,285...    32   0.38 
11_06_0234 + 21574380-21575197,21576131-21576190,21578320-215800...    30   2.0  

>06_01_0398 -
           2858863-2859501,2859616-2859714,2859757-2859821,
           2859927-2860256,2860377-2860398
          Length = 384

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +3

Query: 360 DSDDSDFENDNYKLDNTKVTLKMVSEWQAELQSEGKIKLST 482
           D + SD +ND + ++N  V      +W++++  + K  +ST
Sbjct: 44  DDESSDEDNDYFSMENRDVRFASEEKWESQIMEQMKFSVST 84


>11_06_0234 +
           21574380-21575197,21576131-21576190,21578320-21580053,
           21581859-21582006
          Length = 919

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
 Frame = -1

Query: 336 VFSHHLHYCHSVCQIPDHHWL---LQSSANSRHSLQENYRSLDLSS-SIFPKIFYDSQDL 169
           +F+  ++ CH + Q+  HH +   ++S  N    + E Y    + S    P IF D + L
Sbjct: 97  IFTWLINKCHKLSQLMIHHKIGNDIKSVENQVKEVTERYDRYRIDSIDAKPPIFIDPRIL 156

Query: 168 ALHQSLMN 145
            L++ + N
Sbjct: 157 GLYEKVTN 164


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,014,175
Number of Sequences: 37544
Number of extensions: 297377
Number of successful extensions: 779
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)