Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_E07
         (696 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC060851-1|AAH60851.1|  742|Homo sapiens LOC401010 protein protein.    42   0.002
BC003555-1|AAH03555.1|  749|Homo sapiens nucleolar complex assoc...    42   0.003
AL645608-6|CAI15568.1|  749|Homo sapiens novel protein protein.        42   0.003
AL391121-3|CAI40861.1|  550|Homo sapiens tripartite motif-contai...    32   2.2  
BC021925-1|AAH21925.1|  551|Homo sapiens tripartite motif-contai...    31   3.0  
AF220034-1|AAG53488.1|  551|Homo sapiens tripartite motif protei...    31   3.0  

>BC060851-1|AAH60851.1|  742|Homo sapiens LOC401010 protein protein.
          Length = 742

 Score = 41.9 bits (94), Expect = 0.002
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
 Frame = +3

Query: 414 VTLKMVSEWQAELQSEGKIKLSTLITVIKAFNAAMLRVSSDDGTSQG-EMKVEGSSVFNA 590
           VTL MV  W+   +     KL     V++AF AA+     D   ++  + +V  S+VFNA
Sbjct: 144 VTLAMVERWKQAAKQHLTPKL--FHEVVQAFGAAVATTQGDQEIAEANKFQVTDSAVFNA 201

Query: 591 VIQLCVVNLPGAVKKYL 641
           ++  C+ +L G ++K L
Sbjct: 202 LVTFCIRDLIGCLQKLL 218


>BC003555-1|AAH03555.1|  749|Homo sapiens nucleolar complex
           associated 2 homolog (S. cerevisiae) protein.
          Length = 749

 Score = 41.5 bits (93), Expect = 0.003
 Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
 Frame = +3

Query: 345 GALQADSDDSDFENDNYKLDNTKVTLKMVSEWQAELQSEGKIKLSTLITVIKAFNAAMLR 524
           GA + +  D        K ++  VT+ MV  W+   +     KL     V++AF AA+  
Sbjct: 126 GAEEGEDGDRVPRGLKGKKNSVPVTVAMVERWKQAAKQRLTPKL--FHEVVQAFRAAVAT 183

Query: 525 VSSDDGTSQG-EMKVEGSSVFNAVIQLCVVNLPGAVKKYL 641
              D  +++  + +V  S+ FNA++  C+ +L G ++K L
Sbjct: 184 TRGDQESAEANKFQVTDSAAFNALVTFCIRDLIGCLQKLL 223


>AL645608-6|CAI15568.1|  749|Homo sapiens novel protein protein.
          Length = 749

 Score = 41.5 bits (93), Expect = 0.003
 Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
 Frame = +3

Query: 345 GALQADSDDSDFENDNYKLDNTKVTLKMVSEWQAELQSEGKIKLSTLITVIKAFNAAMLR 524
           GA + +  D        K ++  VT+ MV  W+   +     KL     V++AF AA+  
Sbjct: 126 GAEEGEDGDRVPRGLKGKKNSVPVTVAMVERWKQAAKQRLTPKL--FHEVVQAFRAAVAT 183

Query: 525 VSSDDGTSQG-EMKVEGSSVFNAVIQLCVVNLPGAVKKYL 641
              D  +++  + +V  S+ FNA++  C+ +L G ++K L
Sbjct: 184 TRGDQESAEANKFQVTDSAAFNALVTFCIRDLIGCLQKLL 223


>AL391121-3|CAI40861.1|  550|Homo sapiens tripartite
           motif-containing 8 protein.
          Length = 550

 Score = 31.9 bits (69), Expect = 2.2
 Identities = 15/63 (23%), Positives = 26/63 (41%)
 Frame = -1

Query: 405 CPIYNCHSRSHCHHYQPARLLVCVFSHHLHYCHSVCQIPDHHWLLQSSANSRHSLQENYR 226
           CP +N +   HC   Q A    C +    H  HSVC +      ++     +  L+E  +
Sbjct: 145 CPQHNAYRLYHCEAEQVAVCQYCCYYSGAHQGHSVCDVEIRRNEIRMLMKQQDRLEEREQ 204

Query: 225 SLD 217
            ++
Sbjct: 205 DIE 207


>BC021925-1|AAH21925.1|  551|Homo sapiens tripartite
           motif-containing 8 protein.
          Length = 551

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -1

Query: 405 CPIYNCHSRSHCHHYQPARLLVCVFSHHLHYCHSVCQI 292
           CP +N +   HC   Q A    C +    H  HSVC +
Sbjct: 145 CPQHNAYRLYHCEAEQVAVCQYCCYYSGAHQGHSVCDV 182


>AF220034-1|AAG53488.1|  551|Homo sapiens tripartite motif protein
           TRIM8 protein.
          Length = 551

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -1

Query: 405 CPIYNCHSRSHCHHYQPARLLVCVFSHHLHYCHSVCQI 292
           CP +N +   HC   Q A    C +    H  HSVC +
Sbjct: 145 CPQHNAYRLYHCEAEQVAVCQYCCYYSGAHQGHSVCDV 182


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,202,926
Number of Sequences: 237096
Number of extensions: 1730457
Number of successful extensions: 4389
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4388
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8007229802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)