Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_E07
(696 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81119-2|CAB03332.1| 350|Caenorhabditis elegans Hypothetical pr... 29 2.4
U40939-3|ABD63235.1| 960|Caenorhabditis elegans Hunchback like ... 29 2.4
U40939-2|AAA81701.3| 982|Caenorhabditis elegans Hunchback like ... 29 2.4
AF097737-1|AAD16170.1| 982|Caenorhabditis elegans hunchback-rel... 29 2.4
Z81560-7|CAB76737.2| 188|Caenorhabditis elegans Hypothetical pr... 29 4.2
X77495-1|CAA54629.1| 402|Caenorhabditis elegans lag-2 protein. 29 4.2
U40933-2|AAL27242.1| 158|Caenorhabditis elegans Hypothetical pr... 29 4.2
AC024205-1|AAF36047.1| 402|Caenorhabditis elegans Lin-12 and gl... 29 4.2
Z99268-1|CAB16466.1| 715|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z81573-4|CAB04627.1| 715|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z49908-10|CAA90103.1| 715|Caenorhabditis elegans Hypothetical p... 28 5.5
EU068465-1|ABU49430.1| 715|Caenorhabditis elegans PRO-2 protein. 28 5.5
Z83219-5|CAM35834.1| 390|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z66521-5|CAA91399.1| 312|Caenorhabditis elegans Hypothetical pr... 28 7.3
>Z81119-2|CAB03332.1| 350|Caenorhabditis elegans Hypothetical
protein T10H4.3 protein.
Length = 350
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = -1
Query: 333 FSHHLHYCHSVCQIPDHHWLLQSSANSRHSLQENYRSLDLSSSIFPKIFYDSQ 175
F+ + YC V ++ D W++ + A S +L N R+L+ S +F +F SQ
Sbjct: 266 FNGVVMYCTFVVEVWDKKWIIYAGAAS--NLIVNLRALNSLSHLFVCLFMSSQ 316
>U40939-3|ABD63235.1| 960|Caenorhabditis elegans Hunchback like
(fly gap gene related)protein 1, isoform b protein.
Length = 960
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 393 NCHSRSHCHHYQPARLLVCVFSHHLHYCHSV 301
N H +SH +HYQ R + C ++ YCHS+
Sbjct: 589 NSHMKSHTNHYQ-FRCMDCTYA--TKYCHSL 616
>U40939-2|AAA81701.3| 982|Caenorhabditis elegans Hunchback like
(fly gap gene related)protein 1, isoform a protein.
Length = 982
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 393 NCHSRSHCHHYQPARLLVCVFSHHLHYCHSV 301
N H +SH +HYQ R + C ++ YCHS+
Sbjct: 611 NSHMKSHTNHYQ-FRCMDCTYA--TKYCHSL 638
>AF097737-1|AAD16170.1| 982|Caenorhabditis elegans
hunchback-related protein protein.
Length = 982
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 393 NCHSRSHCHHYQPARLLVCVFSHHLHYCHSV 301
N H +SH +HYQ R + C ++ YCHS+
Sbjct: 611 NSHMKSHTNHYQ-FRCMDCTYA--TKYCHSL 638
>Z81560-7|CAB76737.2| 188|Caenorhabditis elegans Hypothetical
protein K02E2.8a protein.
Length = 188
Score = 28.7 bits (61), Expect = 4.2
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = -3
Query: 643 PKYFFTA--PGRLTTHN*MTALKTDDPSTFISPCEVPSSLLTRSIAALNAFITVINVDSL 470
P F T PG +TT ++A T P T +P ++ T + A TV+ +
Sbjct: 16 PTQFVTPLNPGTITTTTTISAPTTTVPITTTNPVSTTTTTTTTTTEAPTTTTTVVPIPCN 75
Query: 469 ILPSLCNSAC 440
I S N+ C
Sbjct: 76 ICTSPYNAGC 85
>X77495-1|CAA54629.1| 402|Caenorhabditis elegans lag-2 protein.
Length = 402
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -2
Query: 335 YFLIIFITVTLSVRFLIITGCFK 267
Y ++ITV L V F II GCFK
Sbjct: 286 YSSAVYITVALFVIFSIIIGCFK 308
>U40933-2|AAL27242.1| 158|Caenorhabditis elegans Hypothetical
protein F20D12.7 protein.
Length = 158
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +3
Query: 492 VIKAFNAAMLRVSSDDGTSQGEMKVEGSSVFNAVIQL--CVVNLPGAVKKYLGV 647
V + F A ++V+S DG+ + E E SSV +I + + N+ G +K Y G+
Sbjct: 66 VDQKFRDAGIKVNSTDGSDEEEEITEPSSVLLVMITMGGRMANVVGTMKLYKGL 119
>AC024205-1|AAF36047.1| 402|Caenorhabditis elegans Lin-12 and glp-1
phenotype protein2 protein.
Length = 402
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -2
Query: 335 YFLIIFITVTLSVRFLIITGCFK 267
Y ++ITV L V F II GCFK
Sbjct: 286 YSSAVYITVALFVIFSIIIGCFK 308
>Z99268-1|CAB16466.1| 715|Caenorhabditis elegans Hypothetical
protein C07E3.2 protein.
Length = 715
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +3
Query: 495 IKAFNAAMLRVSSDDGTSQGEMKVEGSSVFNAVIQLCVVNLPGAVKKYLGVEQSG 659
+ F A + RV +D + + S+F AV+++C +P +K+ L + G
Sbjct: 182 VDVFVACVARVGAD--IEAPKYVINEQSIFEAVVRMCFQAMPDILKRLLKAKPEG 234
>Z81573-4|CAB04627.1| 715|Caenorhabditis elegans Hypothetical
protein C07E3.2 protein.
Length = 715
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +3
Query: 495 IKAFNAAMLRVSSDDGTSQGEMKVEGSSVFNAVIQLCVVNLPGAVKKYLGVEQSG 659
+ F A + RV +D + + S+F AV+++C +P +K+ L + G
Sbjct: 182 VDVFVACVARVGAD--IEAPKYVINEQSIFEAVVRMCFQAMPDILKRLLKAKPEG 234
>Z49908-10|CAA90103.1| 715|Caenorhabditis elegans Hypothetical
protein C07E3.2 protein.
Length = 715
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +3
Query: 495 IKAFNAAMLRVSSDDGTSQGEMKVEGSSVFNAVIQLCVVNLPGAVKKYLGVEQSG 659
+ F A + RV +D + + S+F AV+++C +P +K+ L + G
Sbjct: 182 VDVFVACVARVGAD--IEAPKYVINEQSIFEAVVRMCFQAMPDILKRLLKAKPEG 234
>EU068465-1|ABU49430.1| 715|Caenorhabditis elegans PRO-2 protein.
Length = 715
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +3
Query: 495 IKAFNAAMLRVSSDDGTSQGEMKVEGSSVFNAVIQLCVVNLPGAVKKYLGVEQSG 659
+ F A + RV +D + + S+F AV+++C +P +K+ L + G
Sbjct: 182 VDVFVACVARVGAD--IEAPKYVINEQSIFEAVVRMCFQAMPDILKRLLKAKPEG 234
>Z83219-5|CAM35834.1| 390|Caenorhabditis elegans Hypothetical
protein C31C9.8 protein.
Length = 390
Score = 27.9 bits (59), Expect = 7.3
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +3
Query: 408 TKVTLKMVSEWQAELQSEGKIKLSTLITVIKAFNAAMLRVSSDDGTSQGEMKVEGSSVFN 587
T+V + ++ E + L+ + + K + + SS Q E KVEG+SVF
Sbjct: 113 TQVVINTINTGMQETTFKFDCGLNHYVMICKDVDNDCIITSSCKYDGQKEWKVEGASVFP 172
Query: 588 AVI 596
AV+
Sbjct: 173 AVL 175
>Z66521-5|CAA91399.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.9 protein.
Length = 312
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = -2
Query: 524 SKHSCIKCFYNRD*CGQFNLAFTLQLCL--PFRN-HFKS 417
S C +C YNR+ F ++T QL + PF+ HF S
Sbjct: 151 SSLECARCVYNREGVAAFYRSYTTQLAMNVPFQAIHFMS 189
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,555,275
Number of Sequences: 27780
Number of extensions: 290382
Number of successful extensions: 999
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -