Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_E07
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          25   0.69 
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    25   0.69 
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           25   0.69 
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           25   0.69 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   3.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   3.7  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   8.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.5  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = -3

Query: 571 PSTFISPCEVPSSLLTRSIAALNAFITVINVDSLILPSLCNSACHSETIL 422
           P+T  SP   PS+  + +I+  +  + V+N D L   ++ ++  H E ++
Sbjct: 380 PTTTASPTTEPSTTTSTTISQKHIKVFVVNKDILHEHNVDDNEDHDENMI 429


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -1

Query: 405 CPIYNCHSRSHCHHYQPARLLVCVFSHHLHYCHS 304
           CP  N      C  Y+PAR +V   ++ + + ++
Sbjct: 261 CPTRNVKEMIRCLRYRPARAIVETLANFMRFYYN 294


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -1

Query: 405 CPIYNCHSRSHCHHYQPARLLVCVFSHHLHYCHS 304
           CP  N      C  Y+PAR +V   ++ + + ++
Sbjct: 132 CPTRNVKEMIRCLRYRPARAIVETLANFMRFYYN 165


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -1

Query: 405 CPIYNCHSRSHCHHYQPARLLVCVFSHHLHYCHS 304
           CP  N      C  Y+PAR +V   ++ + + ++
Sbjct: 261 CPTRNVKEMIRCLRYRPARAIVETLANFMRFYYN 294


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -1

Query: 288 DHHWLLQSSANSRHSLQENYRSLDLSS 208
           D+HW+L+S+      L++   +L L +
Sbjct: 796 DNHWILRSNVQQCEQLEKAPNTLGLKN 822


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 62  CKQCSEYFLIYNE 100
           C QC EY  +Y+E
Sbjct: 560 CDQCEEYEYVYDE 572


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 459 EGKIKLSTLITVIKAFNAAMLRVSSDDGTS 548
           + KI    LIT++ +  +A + ++ DD TS
Sbjct: 350 KSKIGQVFLITILDSKVSARIEMNEDDNTS 379


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 118 SNPNQCRCRIHQTL 159
           SNP  CRC+  Q L
Sbjct: 923 SNPWSCRCKFLQEL 936


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,542
Number of Sequences: 438
Number of extensions: 3181
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)