Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_E05
         (636 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    22   4.9  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    22   4.9  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   6.5  

>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 224 MGLLDRNEHLFYRFVADNVAEMMPI 298
           +GL+ R+  + YR +ADNVA    I
Sbjct: 150 VGLI-RDTAVLYRLLADNVANFNKI 173


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 242 NEHLFYRFVADNVAEMMPIVYTPTVGLACQKFG 340
           N H F RF+A N+  ++  +Y+  V      FG
Sbjct: 108 NCHTFGRFLAPNLTYLLVALYSGYVWTDILGFG 140


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +1

Query: 535 ARRHQASSVSAHHYRR 582
           +  HQ+ SV+ HH+ +
Sbjct: 13  SHHHQSGSVAGHHHEQ 28


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,727
Number of Sequences: 336
Number of extensions: 3864
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16397237
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)