Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_E05
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...   144   1e-35
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    27   1.7  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    26   4.0  
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz...    25   6.9  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   6.9  
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    25   9.1  

>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 565

 Score =  144 bits (348), Expect = 1e-35
 Identities = 83/207 (40%), Positives = 120/207 (57%), Gaps = 7/207 (3%)
 Frame = +2

Query: 35  LSGLDHLKHPGLNKGMAFTIEXRQLLGIHGLLPPRVKTQEEQVELCKLSIDRY----ENP 202
           L G+  L  P  NK  AFT E RQ   I   LPP V+T ++QV+ C    D+Y    + P
Sbjct: 13  LKGVTLLNSPRYNKDTAFTPEERQKFEISSRLPPIVETLQQQVDRC---YDQYKAIGDEP 69

Query: 203 LNKYIYLMGLLDRNEHLFYRFVADNVAEMMPIVYTPTVGLACQKFGLVYRRPRGLFITI- 379
           L K +YL  L   N+ LFY  ++ ++ EM+PI+YTPT G A ++F  +YR P G ++ I 
Sbjct: 70  LQKNLYLSQLSVTNQTLFYALISQHLIEMIPIIYTPTEGDAIKQFSDIYRYPEGCYLDID 129

Query: 380 -HDKGHVYDVLKNWPETD-VRAIVVTDGERILGLGDLGACGMGIPVGKLALYTALGGIKP 553
            +D  ++   L  + ++D V  I++TD E ILG+GD G  G+ I V K  L T   G+ P
Sbjct: 130 HNDLSYIKQQLSEFGKSDSVEYIIITDSEGILGIGDQGVGGVLISVAKGHLMTLCAGLDP 189

Query: 554 HQCLPITIDVGTNTXSMLDDPLYIGLR 634
           ++ LPI +DVGTN  +   +  Y+GLR
Sbjct: 190 NRFLPIVLDVGTNNETHRKNHQYMGLR 216


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/42 (35%), Positives = 17/42 (40%)
 Frame = +1

Query: 472 PGRFGRVRDGHPCGQTRALHRARRHQASSVSAHHYRRGYEHP 597
           P +   + D H C QT   H  R HQA       Y R  E P
Sbjct: 128 PDQVYHLIDNHSCIQTAVSHLLRNHQALFKYLCDYLRSGEFP 169


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 356 PRGLFITIHDKGHVYDVLKNWPETDVRA 439
           P GL+I + +K   +D  + W + D RA
Sbjct: 740 PPGLYIPLAEKRTAWDCFERWIQVDPRA 767


>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
           Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -3

Query: 511 HRDAHPARAQIAQAQNTFSVGYNNGADVRLRPVLKNIVYMSLIVDRDEEA 362
           H D +P   + A+  +   + YN   DV+LR    +  +  L   R EEA
Sbjct: 37  HPDKNPNDPKAAEKFHMLQLAYNALIDVQLRKAYDSERFAKLARKRREEA 86


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +3

Query: 201 HLTSTSILWGSWTAMSICS--TVSSRITW 281
           HL  TS++ G+W  +   S   VS  +TW
Sbjct: 71  HLNHTSVMTGNWNILPYPSFGKVSPNVTW 99


>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 520 RALHRARRHQASSVSAHHYRRGYEHP 597
           R  H+  RH +S++++   R GY+ P
Sbjct: 276 RRRHKRSRHNSSNLASTPKRNGYKQP 301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,717,708
Number of Sequences: 5004
Number of extensions: 58766
Number of successful extensions: 181
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)