Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_E04
         (832 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    27   4.3  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    26   5.7  
SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase S...    25   10.0 
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           25   10.0 

>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 152 SNTVISHKPNSN*RLLLSTFFPYFIKLYECIEK 54
           + TV++HK      LL+  +F +F KL   +EK
Sbjct: 293 NQTVLTHKQVDVANLLIEIYFVFFTKLLFALEK 325


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +2

Query: 83   NMEKMSKVTNVNSSLAYEILLYLNSFY-LGMFIVCEVAMGILKAINVSYP-ENALLTEAG 256
            N++  S     ++ LA+ +  ++NS+Y L + +  E  M I    N     +NALLT + 
Sbjct: 1189 NIQLSSPAAQESAKLAFSLHGWINSWYLLALVMHGEWDMAISYGENFKREFKNALLTSSR 1248

Query: 257  IFSALCF 277
            +F    F
Sbjct: 1249 VFGIFMF 1255


>SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase
           Srb10 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 319 SKQKNTGLSVSAIDDSLCCRSMLFSNLSNL 408
           S  + TG+S SAI + + CR +   N+ +L
Sbjct: 47  SNAQQTGVSQSAIREMMLCREIQHENIVSL 76


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 487 YFYCM*KSTI*LNNENLNLKYCKHSIFLLNIALIQFD 597
           YF    + T+ L +EN N  + K  I  +N+  ++FD
Sbjct: 419 YFQASCRHTLNLLDENANYNFSKIFITHVNVPALEFD 455


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,172,882
Number of Sequences: 5004
Number of extensions: 63882
Number of successful extensions: 131
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)