Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_E04
         (832 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328...    30   2.6  
06_01_1089 - 8935945-8936043,8936722-8936949,8937033-8937086,894...    28   7.9  

>05_03_0604 -
           16132173-16132391,16132488-16132556,16132824-16132898,
           16132981-16133113,16133188-16133297,16133360-16133407,
           16133657-16133983,16135006-16135233,16135360-16135689,
           16135780-16136586
          Length = 781

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -3

Query: 458 HGTLT*RHTRCIPTEVCKFDKLENNILLQQRESSIALTERPV--FFCLLSFLYA 303
           HG +T  H   +      FDK+  N + +   S++   + PV  FF L+ F+Y+
Sbjct: 359 HGLVTHAHKLILSLWSMTFDKMFTNGMKESSASNVFFEDVPVEAFFLLIQFMYS 412


>06_01_1089 -
           8935945-8936043,8936722-8936949,8937033-8937086,
           8940200-8940276,8940453-8940554,8941138-8941261
          Length = 227

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -2

Query: 129 AKLELTFVTFDIFSIFYKIVRMY*KVSKLRGGCFEVS 19
           A + L F  ++I  +  ++V++  K+SKL   CF +S
Sbjct: 33  ATVNLFFDIYEIIMVVSRLVKLQVKISKLNEVCFAIS 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,976,457
Number of Sequences: 37544
Number of extensions: 323837
Number of successful extensions: 520
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)