Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_E04
         (832 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81541-4|CAD91634.1|  266|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AJ487543-1|CAD31791.1|  266|Caenorhabditis elegans farnesylated-...    29   4.1  
U40160-3|AAA81157.2|  363|Caenorhabditis elegans Nuclear hormone...    28   7.1  
AC006769-1|AAF60590.2|  287|Caenorhabditis elegans Hypothetical ...    28   7.1  
AC006722-17|ABP57812.1|  141|Caenorhabditis elegans Hypothetical...    28   7.1  

>Z81541-4|CAD91634.1|  266|Caenorhabditis elegans Hypothetical
           protein F48F5.5 protein.
          Length = 266

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +2

Query: 110 NVNSSLAYEILLYLNSFYLGMFIVCEV 190
           N+  S+ Y  +L +N+FYLG F++ ++
Sbjct: 73  NIGQSITYPFIL-MNAFYLGQFVMMQI 98


>AJ487543-1|CAD31791.1|  266|Caenorhabditis elegans
           farnesylated-proteins convertingenzyme-2 protein.
          Length = 266

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +2

Query: 110 NVNSSLAYEILLYLNSFYLGMFIVCEV 190
           N+  S+ Y  +L +N+FYLG F++ ++
Sbjct: 73  NIGQSITYPFIL-MNAFYLGQFVMMQI 98


>U40160-3|AAA81157.2|  363|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 137, isoform a protein.
          Length = 363

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = +2

Query: 215 NVSYPENALLTEAGIFSALCFVEMIRIFLG-RRGNLASKKIPVFLSVLLTIPSAVGVCYF 391
           ++S P  +        +A C  + +R+    R+ N+  +KI + +S LLT+PS +     
Sbjct: 93  SISLPSTSTAIPKVTETASCLRQTLRLITKFRKCNIIVEKIDLHISALLTMPSFLDNLNN 152

Query: 392 LIYQTYILRLEYIWCAVMLM 451
              +T   R    WC + L+
Sbjct: 153 YQEETDFKRDLPEWCTIDLL 172


>AC006769-1|AAF60590.2|  287|Caenorhabditis elegans Hypothetical
           protein Y45G12C.8 protein.
          Length = 287

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 24/81 (29%), Positives = 41/81 (50%)
 Frame = +2

Query: 104 VTNVNSSLAYEILLYLNSFYLGMFIVCEVAMGILKAINVSYPENALLTEAGIFSALCFVE 283
           +T++ + L   + LYLNSF L     C+ A  + +++ + Y +  L  +A I   + FVE
Sbjct: 7   LTSILAILFSFLALYLNSFILFSIFYCKRA-HVNRSMILIYFKFGL--DAIIMFFMFFVE 63

Query: 284 MIRIFLGRRGNLASKKIPVFL 346
           +  +    R NL +K I   L
Sbjct: 64  IYNLSTSYRVNLITKNIAFLL 84


>AC006722-17|ABP57812.1|  141|Caenorhabditis elegans Hypothetical
           protein Y19D10A.17 protein.
          Length = 141

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 24/81 (29%), Positives = 41/81 (50%)
 Frame = +2

Query: 104 VTNVNSSLAYEILLYLNSFYLGMFIVCEVAMGILKAINVSYPENALLTEAGIFSALCFVE 283
           +T++ + L   + LYLNSF L     C+ A  + +++ + Y +  L  +A I   + FVE
Sbjct: 7   LTSILAILFSFLALYLNSFILFSIFYCKRA-HVNRSMILIYFKFGL--DAIIMFFMFFVE 63

Query: 284 MIRIFLGRRGNLASKKIPVFL 346
           +  +    R NL +K I   L
Sbjct: 64  IYNLSTSYRVNLITKNIAFLL 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,211,952
Number of Sequences: 27780
Number of extensions: 347738
Number of successful extensions: 767
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)