Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_E04
         (832 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    25   1.1  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   2.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   3.5  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   8.0  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   8.0  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 683 PYFVVNLVTLYLLVCI 730
           P+F VN+VT Y   CI
Sbjct: 287 PFFCVNIVTSYCKTCI 302


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 111 TLIRVWLMRYYCI 149
           TL+ VW++ Y+CI
Sbjct: 179 TLLLVWILCYFCI 191


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 111 TLIRVWLMRYYCI 149
           TL  VW+M Y+CI
Sbjct: 212 TLAVVWIMCYFCI 224


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 111 TLIRVWLMRYYCI 149
           TL  VW+M Y+CI
Sbjct: 265 TLAVVWIMCYFCI 277


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 131 YEILLYLNSFYLGMFIVCEV 190
           Y+I   L SFY+ +F++ +V
Sbjct: 202 YQIYATLGSFYIPLFVMIQV 221


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 374 VGVCYFLIYQTYILRLEYIW 433
           + +CY++IY TY  + E+ W
Sbjct: 483 LNICYWVIYVTY--QEEFKW 500


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 126 KLELTFVTFDI 94
           K+E+ F+TFDI
Sbjct: 103 KIEINFITFDI 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,316
Number of Sequences: 438
Number of extensions: 4000
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)