Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_E03
(547 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0210 + 15470680-15470715,15473088-15473342,15473417-154734... 75 4e-14
07_03_1305 - 25638531-25638584,25638909-25638990,25639087-256391... 75 5e-14
02_05_1031 - 33626527-33626580,33627482-33627563,33628892-33628911 58 3e-09
04_04_0390 - 24882572-24882577,24882928-24883009,24883089-248832... 54 7e-08
09_06_0272 - 21962495-21962524,21962742-21962918 31 0.79
05_05_0223 - 23406814-23407477,23407597-23407919 31 0.79
04_02_0017 - 8572400-8572732,8572818-8572919,8573138-8573230,857... 29 3.2
05_01_0431 + 3412178-3412336,3413012-3413109,3413185-3413312,341... 28 4.2
04_04_0692 - 27307349-27307728,27308381-27308546 28 5.6
04_04_0293 - 24189344-24189350,24189804-24190026,24190411-241905... 28 5.6
02_05_0485 - 29415423-29415509,29416512-29416633,29417353-294173... 28 5.6
11_01_0774 - 6464482-6466684,6467214-6467920,6467928-6468152 27 7.4
12_01_0590 - 4813764-4814401,4814785-4814872,4815176-4815376,481... 27 9.8
12_01_0314 - 2395113-2395760,2396151-2396738,2397218-2397252,239... 27 9.8
03_01_0527 + 3960982-3961290,3961371-3961464,3961898-3962084,396... 27 9.8
02_05_0783 + 31723330-31723585,31723683-31723857,31723953-317241... 27 9.8
>03_03_0210 +
15470680-15470715,15473088-15473342,15473417-15473499,
15473617-15473698,15474886-15474939
Length = 169
Score = 74.9 bits (176), Expect = 4e-14
Identities = 28/61 (45%), Positives = 38/61 (62%)
Frame = +3
Query: 255 YNTAHWILHCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWDNQRAEGTFA 434
+ T + HC+ YV++HRC +GE C F + YRSLCP EWV++W+ QR GTF
Sbjct: 107 FPTTNQTRHCFTRYVEYHRCVAAKGEDAPECDKFAKYYRSLCPGEWVERWNEQRENGTFP 166
Query: 435 G 437
G
Sbjct: 167 G 167
>07_03_1305 -
25638531-25638584,25638909-25638990,25639087-25639169,
25639252-25639515,25639984-25640060,25640183-25640277,
25640953-25641065
Length = 255
Score = 74.5 bits (175), Expect = 5e-14
Identities = 26/61 (42%), Positives = 39/61 (63%)
Frame = +3
Query: 255 YNTAHWILHCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWDNQRAEGTFA 434
+ T + HC+ Y+++HRC +GE C F + YRSLCP+EW+++W+ QR GTF
Sbjct: 193 FPTTNQTRHCFTRYIEYHRCVAAKGEGAPECEKFAKYYRSLCPSEWIERWNEQRENGTFP 252
Query: 435 G 437
G
Sbjct: 253 G 253
>02_05_1031 - 33626527-33626580,33627482-33627563,33628892-33628911
Length = 51
Score = 58.4 bits (135), Expect = 3e-09
Identities = 21/42 (50%), Positives = 29/42 (69%)
Frame = +3
Query: 312 CQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWDNQRAEGTFAG 437
C + +GE + C + + YRSLCP EW+++W QRA GTFAG
Sbjct: 8 CIEAKGEGSDECTKYAKCYRSLCPGEWIERWKEQRANGTFAG 49
>04_04_0390 -
24882572-24882577,24882928-24883009,24883089-24883200,
24883411-24883441
Length = 76
Score = 54.0 bits (124), Expect = 7e-08
Identities = 19/46 (41%), Positives = 27/46 (58%)
Frame = +3
Query: 255 YNTAHWILHCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEW 392
+ T + HC+ Y+++HRC +GE C F + YRSLCP EW
Sbjct: 30 FPTTNQTRHCFTRYIEYHRCVNAKGEATADCEKFAKYYRSLCPAEW 75
>09_06_0272 - 21962495-21962524,21962742-21962918
Length = 68
Score = 30.7 bits (66), Expect = 0.79
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 450 GSKSYRRRCLRRAGCPTCRPTHWGRET 370
G +R++ G P CRP HW R T
Sbjct: 11 GGGDFRQKVWSMTGGPYCRPVHWRRNT 37
>05_05_0223 - 23406814-23407477,23407597-23407919
Length = 328
Score = 30.7 bits (66), Expect = 0.79
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 322 FAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPS 432
FA+ N A++S C+G A + TS +S P+AP+
Sbjct: 219 FASSNGGDASVSWPCSGDDAQNNSETSHESSPPEAPA 255
>04_02_0017 -
8572400-8572732,8572818-8572919,8573138-8573230,
8573391-8573519,8573781-8574025,8574184-8574453,
8574590-8574752,8575965-8576063
Length = 477
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -2
Query: 498 DLIKTNRNKLKHRERLGSKSYR 433
+L KTNR+K+K+ GS+SY+
Sbjct: 306 ELNKTNRSKVKYHHTTGSRSYK 327
>05_01_0431 +
3412178-3412336,3413012-3413109,3413185-3413312,
3413770-3413881,3414309-3414489,3414714-3414896,
3415133-3415315,3416062-3416131,3416413-3416522,
3416604-3416908,3417079-3417175,3417622-3417765,
3418217-3418303,3418387-3418473,3418566-3418706,
3418805-3418930,3419166-3419264,3419690-3419757,
3420275-3420341,3420713-3420883,3420959-3421048,
3421831-3421911,3423397-3423470,3423784-3423855,
3423925-3424017,3424138-3424204
Length = 1030
Score = 28.3 bits (60), Expect = 4.2
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = +3
Query: 351 YFKRVYRSLCPNEWVDKWDNQRAEGTFAGRI*ILNVPD 464
+F R ++ L PNEW++ ++ + +G + L++ D
Sbjct: 879 HFLRGFQQLIPNEWINMFNEHEFQVLISGSLESLDIDD 916
>04_04_0692 - 27307349-27307728,27308381-27308546
Length = 181
Score = 27.9 bits (59), Expect = 5.6
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +1
Query: 286 TKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPS 432
T VT T + R F +T H + T A +SGS +G T K S
Sbjct: 91 TIVTLTRSGTRYFICGSTGHCGAGMKLTVTVATLSGSAAGGTRLAKPSS 139
>04_04_0293 -
24189344-24189350,24189804-24190026,24190411-24190529,
24191331-24191578
Length = 198
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 325 AAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 438
A K T A + + T +AP S + S +P+APSPV
Sbjct: 39 APKATAPAGPAPKATATAAPSSKAPSPAAPSPEAPSPV 76
>02_05_0485 -
29415423-29415509,29416512-29416633,29417353-29417374,
29419603-29419866
Length = 164
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 88 TXSLTKIRRGNVRIVCLWFVENV 156
T SL +R GNVR V W V+ V
Sbjct: 118 TWSLNSVRGGNVRFVHFWTVQTV 140
>11_01_0774 - 6464482-6466684,6467214-6467920,6467928-6468152
Length = 1044
Score = 27.5 bits (58), Expect = 7.4
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 7/95 (7%)
Frame = +1
Query: 175 LRQLCTSLQVLSIVIIIKLQQWDKIYFITLHTGYCTATKVTWTSTVA----RKFAAKNTN 342
L+ LC L LS IK++ + + +TLH+G AT+ W R +
Sbjct: 890 LQLLCKDLHGLSD---IKIECFKHLQEVTLHSGVTPATRQEWVKAAKEHPNRPKVLLLKS 946
Query: 343 HATISRECTGLSAPMSGSTSGTTS---APKAPSPV 438
T E T + + M S TT AP+ P V
Sbjct: 947 VDTAESEHTDVDSVMEAVKSETTEYSIAPEGPEQV 981
>12_01_0590 -
4813764-4814401,4814785-4814872,4815176-4815376,
4816803-4816830,4817136-4817339,4817352-4819136,
4820358-4821139
Length = 1241
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = +3
Query: 186 VHKPTSLINCDHHQTSTMG*NIFYNTA-HWILHCYQSYVDFHRCQKVRGEKYE 341
VH L+ C + G + + H + C++ ++DF C R +K E
Sbjct: 796 VHLDLRLLVCPEERVIFSGTGMAFRALKHLLFRCHKPFLDFKACSMPRLQKLE 848
>12_01_0314 -
2395113-2395760,2396151-2396738,2397218-2397252,
2397546-2397632,2397913-2397985,2398648-2398714,
2398795-2398931,2400196-2400217,2400733-2400807,
2402281-2402365,2402605-2403334
Length = 848
Score = 27.1 bits (57), Expect = 9.8
Identities = 21/62 (33%), Positives = 27/62 (43%)
Frame = -2
Query: 447 SKSYRRRCLRRAGCPTCRPTHWGRETCTLS*NSSMVRIFRRELSGNGGSPRNFGSSAISS 268
S+ RRR LRRA C CR R + T + M R R NG G ++S
Sbjct: 113 SQRQRRRLLRRAVCAVCR-----RSSTTATRCERMTRWRRGWKGSNGCCGGGGGGKGMAS 167
Query: 267 VQ 262
V+
Sbjct: 168 VR 169
>03_01_0527 +
3960982-3961290,3961371-3961464,3961898-3962084,
3962194-3962449,3962561-3962773,3962856-3962942,
3963089-3963223,3963296-3963409,3963507-3963754,
3963824-3963904,3963979-3964210,3964340-3964438,
3964513-3964701,3964928-3965023
Length = 779
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +1
Query: 241 DKIYFITLHTGYCTATKVTWTSTVARKFAAKNTNH 345
D I+F + G C A K W S + + NT H
Sbjct: 462 DHIWFFSWDEGACYAPKEIWNSMMLVHWGNTNTKH 496
>02_05_0783 +
31723330-31723585,31723683-31723857,31723953-31724166,
31724388-31725032,31725199-31725335,31725440-31725554
Length = 513
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +1
Query: 334 NTNHATISRECTGLSAPMSGSTSGTTSA 417
NTN +T+S E T S S S S TTSA
Sbjct: 181 NTNLSTVSNESTTKSILSSVSVSDTTSA 208
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,960,700
Number of Sequences: 37544
Number of extensions: 317389
Number of successful extensions: 1057
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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