Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_E03
(547 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024859-18|AAK29974.1| 121|Caenorhabditis elegans Hypothetical... 71 5e-13
AF016451-8|AAB66004.2| 354|Caenorhabditis elegans Serpentine re... 35 0.044
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 30 1.2
U39999-8|AAY44011.1| 146|Caenorhabditis elegans Hypothetical pr... 30 1.2
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 29 1.7
U23449-4|AAC24299.2| 534|Caenorhabditis elegans Hypothetical pr... 29 1.7
U39999-7|AAY44012.1| 232|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z83216-4|CAB62781.1| 314|Caenorhabditis elegans Hypothetical pr... 28 3.8
Z66494-12|CAE17686.1| 1007|Caenorhabditis elegans Hypothetical p... 28 3.8
Z66494-11|CAA91265.2| 1048|Caenorhabditis elegans Hypothetical p... 28 3.8
Z54284-8|CAE17775.1| 1007|Caenorhabditis elegans Hypothetical pr... 28 3.8
Z54284-7|CAA91065.2| 1048|Caenorhabditis elegans Hypothetical pr... 28 3.8
AF098995-5|AAC67482.1| 477|Caenorhabditis elegans Hypothetical ... 28 5.0
Z66495-4|CAA91271.1| 954|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical pr... 27 6.7
AL117195-5|CAB55012.1| 732|Caenorhabditis elegans Hypothetical ... 27 6.7
Z98877-17|CAB11571.1| 389|Caenorhabditis elegans Hypothetical p... 27 8.8
AL021497-21|CAA16413.1| 389|Caenorhabditis elegans Hypothetical... 27 8.8
AF273823-1|AAG15172.1| 388|Caenorhabditis elegans nuclear recep... 27 8.8
AF273822-1|AAG15171.1| 387|Caenorhabditis elegans nuclear recep... 27 8.8
AF273821-1|AAG15170.1| 383|Caenorhabditis elegans nuclear recep... 27 8.8
AF039718-5|AAP68905.1| 760|Caenorhabditis elegans Prion-like-(q... 27 8.8
AF039718-4|AAP68906.2| 696|Caenorhabditis elegans Prion-like-(q... 27 8.8
>AC024859-18|AAK29974.1| 121|Caenorhabditis elegans Hypothetical
protein Y71H2AM.5 protein.
Length = 121
Score = 70.9 bits (166), Expect = 5e-13
Identities = 23/53 (43%), Positives = 35/53 (66%)
Frame = +3
Query: 282 CYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWDNQRAEGTFAGR 440
C+ YVDFHRC ++ G+ Y+PC +F+ VY+ CP W ++WD +EG F +
Sbjct: 66 CFAYYVDFHRCNELMGQDYKPCKFFQNVYKDFCPGFWTERWDELLSEGRFPAK 118
>AF016451-8|AAB66004.2| 354|Caenorhabditis elegans Serpentine
receptor, class t protein65 protein.
Length = 354
Score = 34.7 bits (76), Expect = 0.044
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 148 ENVSTIVSELRQLCTSLQVLSIVIIIKLQQWDKIYFITLH 267
+ +S L Q+C ++++L I I+ K WD +Y I LH
Sbjct: 9 DTISQFNPSLLQICRNVKILCIKILCKFITWDFLYLIKLH 48
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
C41A3.1 protein.
Length = 7829
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +3
Query: 249 IFYNTAHWILHCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNE 389
+F NT HW L Y+ +D H Q++ ++ +Y K + + P +
Sbjct: 4828 VFNNTLHWALDSYRDEIDRHESQQM---SFKNIFYEKVLLETPMPQQ 4871
>U39999-8|AAY44011.1| 146|Caenorhabditis elegans Hypothetical
protein F41G3.19 protein.
Length = 146
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = +1
Query: 271 GYCTATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPVGF 444
GYCT++ T ++T + TN +T +CT +++ + S T + P G+
Sbjct: 85 GYCTSSSSTSSTTSSSSTCVDLTNASTGVSDCTRMASYCTNSIYLTLMKQQCPKTCGY 142
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +1
Query: 286 TKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPVG 441
T T +ST+ + +T H T+S+ +G ++P + S +G+T + S G
Sbjct: 1426 TGSTESSTLLSSTISGSTQHTTMSKASSGSTSPSTNSQTGSTVTMGSSSTSG 1477
>U23449-4|AAC24299.2| 534|Caenorhabditis elegans Hypothetical
protein K06A1.5 protein.
Length = 534
Score = 29.5 bits (63), Expect = 1.7
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Frame = -2
Query: 456 RLGSKSYRRRCLRRAGCPTCRPTHWG--RETCTLS*NSSMV---RIFRRELSGNGGSPRN 292
RL S R CL + TCR + R T S ++ V R+F+ +G + R
Sbjct: 295 RLDYDSQRHVCLASSNDKTCRLWNIDSQRLLSTFSGHTDKVSSARLFQSHNVISGSADRT 354
Query: 291 FGSSAISSVQCYKIYFIPLLKFD 223
+ ISS++C K Y + FD
Sbjct: 355 IKNWDISSIRCLKSYLVGSTVFD 377
>U39999-7|AAY44012.1| 232|Caenorhabditis elegans Hypothetical
protein F41G3.20 protein.
Length = 232
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +1
Query: 271 GYCTATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPVGF 444
GYCT++ T TS+ + TN +T +C G+++ + S T + P G+
Sbjct: 122 GYCTSSSATTTSSSST--CIDLTNASTGVSDCPGMASYCTNSAYLTLMKQQCPKTCGY 177
>Z83216-4|CAB62781.1| 314|Caenorhabditis elegans Hypothetical
protein C08F11.5 protein.
Length = 314
Score = 28.3 bits (60), Expect = 3.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 220 IIKLQQWDKIYFITLHTGYCTATKV 294
++KL+QW K FI ++ GY KV
Sbjct: 198 LVKLEQWKKAKFIEIYGGYTFPFKV 222
>Z66494-12|CAE17686.1| 1007|Caenorhabditis elegans Hypothetical
protein D2085.5b protein.
Length = 1007
Score = 28.3 bits (60), Expect = 3.8
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -2
Query: 528 HILFY*ITSFDLIKTNRNKLKHRERLGSKSYRRRCLRRAGCPTCRPTHWG 379
H LF + D++ +KL+ + RR CLR C PT +G
Sbjct: 136 HFLF----ALDIVMIESSKLRLHPSISEVEVRRACLRALSSVICWPTTFG 181
>Z66494-11|CAA91265.2| 1048|Caenorhabditis elegans Hypothetical
protein D2085.5a protein.
Length = 1048
Score = 28.3 bits (60), Expect = 3.8
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -2
Query: 528 HILFY*ITSFDLIKTNRNKLKHRERLGSKSYRRRCLRRAGCPTCRPTHWG 379
H LF + D++ +KL+ + RR CLR C PT +G
Sbjct: 177 HFLF----ALDIVMIESSKLRLHPSISEVEVRRACLRALSSVICWPTTFG 222
>Z54284-8|CAE17775.1| 1007|Caenorhabditis elegans Hypothetical
protein D2085.5b protein.
Length = 1007
Score = 28.3 bits (60), Expect = 3.8
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -2
Query: 528 HILFY*ITSFDLIKTNRNKLKHRERLGSKSYRRRCLRRAGCPTCRPTHWG 379
H LF + D++ +KL+ + RR CLR C PT +G
Sbjct: 136 HFLF----ALDIVMIESSKLRLHPSISEVEVRRACLRALSSVICWPTTFG 181
>Z54284-7|CAA91065.2| 1048|Caenorhabditis elegans Hypothetical
protein D2085.5a protein.
Length = 1048
Score = 28.3 bits (60), Expect = 3.8
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -2
Query: 528 HILFY*ITSFDLIKTNRNKLKHRERLGSKSYRRRCLRRAGCPTCRPTHWG 379
H LF + D++ +KL+ + RR CLR C PT +G
Sbjct: 177 HFLF----ALDIVMIESSKLRLHPSISEVEVRRACLRALSSVICWPTTFG 222
>AF098995-5|AAC67482.1| 477|Caenorhabditis elegans Hypothetical
protein F58E1.4 protein.
Length = 477
Score = 27.9 bits (59), Expect = 5.0
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Frame = +1
Query: 247 IYFITLHTGYCTATKVTWTSTVARKF----AAKNTNHATISRECTGLSAPM 387
+YF LH YC K + T+ K+ T T+ CT +S +
Sbjct: 306 VYFKNLHATYCEGEKEQFVETLLEKYEICWLTTTTTLKTLKSNCTVISGDL 356
>Z66495-4|CAA91271.1| 954|Caenorhabditis elegans Hypothetical
protein C36A4.5 protein.
Length = 954
Score = 27.5 bits (58), Expect = 6.7
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1
Query: 289 KVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPVGFR 447
K +A+K A A S+ + +SAP + + + T+SAP A +P R
Sbjct: 409 KAAKAEAIAQKKVAGKVQRAAPSKPASAVSAPKATAPASTSSAP-ATAPEASR 460
>Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical
protein R07E3.6 protein.
Length = 927
Score = 27.5 bits (58), Expect = 6.7
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +1
Query: 286 TKVTWTSTVARKFAAKNTNHATISRE---CTGLSAPMSGSTSGTTSAPKAPS 432
TKVT TST T AT + E T AP + +T TT+ + P+
Sbjct: 310 TKVTPTSTTTEIPTTTTTEEATTTTEEITTTTTKAPTTTTTQSTTTTTQLPT 361
>AL117195-5|CAB55012.1| 732|Caenorhabditis elegans Hypothetical
protein Y57A10A.7 protein.
Length = 732
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 303 FHRCQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWDN 410
F+R ++ G YY+ R + + PN + KWDN
Sbjct: 29 FNRFAELDGAGLSHIYYYIRFHEHIAPN--IAKWDN 62
>Z98877-17|CAB11571.1| 389|Caenorhabditis elegans Hypothetical
protein Y51A2D.17 protein.
Length = 389
Score = 27.1 bits (57), Expect = 8.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 264 AHWILHCYQSYVDFHRCQKV 323
A WIL+ Y + D H+ QK+
Sbjct: 186 ADWILNSYPGFADLHKDQKI 205
>AL021497-21|CAA16413.1| 389|Caenorhabditis elegans Hypothetical
protein Y51A2D.17 protein.
Length = 389
Score = 27.1 bits (57), Expect = 8.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 264 AHWILHCYQSYVDFHRCQKV 323
A WIL+ Y + D H+ QK+
Sbjct: 186 ADWILNSYPGFADLHKDQKI 205
>AF273823-1|AAG15172.1| 388|Caenorhabditis elegans nuclear receptor
NHR-70 protein.
Length = 388
Score = 27.1 bits (57), Expect = 8.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 264 AHWILHCYQSYVDFHRCQKV 323
A WIL+ Y + D H+ QK+
Sbjct: 185 ADWILNSYPGFADLHKDQKI 204
>AF273822-1|AAG15171.1| 387|Caenorhabditis elegans nuclear receptor
NHR-70 protein.
Length = 387
Score = 27.1 bits (57), Expect = 8.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 264 AHWILHCYQSYVDFHRCQKV 323
A WIL+ Y + D H+ QK+
Sbjct: 184 ADWILNSYPGFADLHKDQKI 203
>AF273821-1|AAG15170.1| 383|Caenorhabditis elegans nuclear receptor
NHR-70 protein.
Length = 383
Score = 27.1 bits (57), Expect = 8.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 264 AHWILHCYQSYVDFHRCQKV 323
A WIL+ Y + D H+ QK+
Sbjct: 180 ADWILNSYPGFADLHKDQKI 199
>AF039718-5|AAP68905.1| 760|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
isoform a protein.
Length = 760
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/46 (23%), Positives = 20/46 (43%)
Frame = +1
Query: 331 KNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPVGFRS*TFPML 468
+ +H+ + ++ + ++ AP APSP F FP L
Sbjct: 699 ETNHHSAVEKDAEKIKVRSPPVVVASSPAPAAPSPFSFEETAFPSL 744
>AF039718-4|AAP68906.2| 696|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
isoform b protein.
Length = 696
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/46 (23%), Positives = 20/46 (43%)
Frame = +1
Query: 331 KNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPVGFRS*TFPML 468
+ +H+ + ++ + ++ AP APSP F FP L
Sbjct: 601 ETNHHSAVEKDAEKIKVRSPPVVVASSPAPAAPSPFSFEETAFPSL 646
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,128,275
Number of Sequences: 27780
Number of extensions: 288642
Number of successful extensions: 885
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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