Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_E01
(725 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein. 34 0.005
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein. 33 0.012
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein. 29 0.15
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein. 28 0.26
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript... 27 0.45
AJ297931-1|CAC35451.1| 166|Anopheles gambiae hypothetical prote... 27 0.78
AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr... 26 1.4
AJ439060-14|CAD27765.1| 471|Anopheles gambiae putative acetyltr... 25 3.2
AJ130951-1|CAA10260.1| 189|Anopheles gambiae SG3 protein protein. 25 3.2
AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta... 23 9.6
>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
Length = 1133
Score = 33.9 bits (74), Expect = 0.005
Identities = 22/101 (21%), Positives = 45/101 (44%)
Frame = +1
Query: 223 QLQKKIQTIENELDQTQESLMQVNGKLEEKEKALQNAESEVAALNRRIQXXXXXXXXXXX 402
+LQK I+ + +LDQ + ++ Q + K+ A+ E+E+A + I
Sbjct: 797 KLQKGIEEEQAKLDQVRRTVQQEEQTAQAKKDAMGAVEAEIARIQASIDKEQQARHDLQT 856
Query: 403 XXATATAKLSEASQAADESERARKVLENRSLADEERMDALE 525
L ++++ +E +R R L + ++ R +A E
Sbjct: 857 NHKVKQQALKRSTESMEERKRTRVALS--AALEQARQEASE 895
>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
Length = 1187
Score = 32.7 bits (71), Expect = 0.012
Identities = 22/130 (16%), Positives = 57/130 (43%)
Frame = +1
Query: 229 QKKIQTIENELDQTQESLMQVNGKLEEKEKALQNAESEVAALNRRIQXXXXXXXXXXXXX 408
++++++ E +L ++++ + ++ E+ + + E+ L + I
Sbjct: 786 ERELKSAEEDLKRSKKKSEESRKNWKKHEQDFETLKLEIEELQKGIVTAKEQAVKLEEQI 845
Query: 409 ATATAKLSEASQAADESERARKVLENRSLADEERMDALENQLKEARFLAEEADKKYDEVA 588
A +L E S DE A L+ + +E+M++ +LK ++ K+ DE+
Sbjct: 846 AALQQRLVEVSGTTDEMTAAVTALKQQIKQHKEKMNSQSKELKAKYHQRDKLLKQNDELK 905
Query: 589 RKLAMVEADL 618
++ E ++
Sbjct: 906 LEIKKKENEI 915
>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
Length = 1376
Score = 29.1 bits (62), Expect = 0.15
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +1
Query: 229 QKKIQTIENELDQTQESLMQVNGKLEEKEKALQNAESEVAALN 357
++K+Q NE + ++L V GKL+E A+Q+ S+ L+
Sbjct: 547 KQKLQENANEERELTQTLRAVQGKLQESMAAMQSTRSQGKVLD 589
Score = 24.2 bits (50), Expect = 4.2
Identities = 18/64 (28%), Positives = 26/64 (40%)
Frame = +1
Query: 427 LSEASQAADESERARKVLENRSLADEERMDALENQLKEARFLAEEADKKYDEVARKLAMV 606
L E + E E R +E DAL+ + E L +E K+YDE+
Sbjct: 315 LCEQKRKIGEFEVERDQAAGILAKHDETYDALKAERVEKEKLVKEEIKQYDELVSAKESK 374
Query: 607 EADL 618
E+ L
Sbjct: 375 ESTL 378
Score = 24.2 bits (50), Expect = 4.2
Identities = 20/101 (19%), Positives = 39/101 (38%)
Frame = +1
Query: 250 ENELDQTQESLMQVNGKLEEKEKALQNAESEVAALNRRIQXXXXXXXXXXXXXATATAKL 429
E+EL Q + KLE + + E ++ R+Q TA KL
Sbjct: 491 ESELKICQHDEVTERRKLESLRYSYEETEKDLEEKRARLQTLEEALPVTRTELETAKQKL 550
Query: 430 SEASQAADESERARKVLENRSLADEERMDALENQLKEARFL 552
E + E + + ++ + +E M A+++ + + L
Sbjct: 551 QENANEERELTQTLRAVQGKL---QESMAAMQSTRSQGKVL 588
>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
Length = 1036
Score = 28.3 bits (60), Expect = 0.26
Identities = 29/133 (21%), Positives = 56/133 (42%), Gaps = 3/133 (2%)
Frame = +1
Query: 223 QLQKKIQTIENELDQTQESLMQVNG---KLEEKEKALQNAESEVAALNRRIQXXXXXXXX 393
+L+++ + ++ +L + Q++ M+V K +E L N + E R +
Sbjct: 651 ELREQKRDLQEQLSKYQQTKMKVKRQEQKCKELTARLVNVDEEKVKFERSCRTIIEQLLD 710
Query: 394 XXXXXATATAKLSEASQAADESERARKVLENRSLADEERMDALENQLKEARFLAEEADKK 573
A + + AS+ D E+ ++ E R+ E LE+ + A+ K
Sbjct: 711 QQRRKVAALERYAAASREHDLLEQRIRLFEERNNDREANFRLLEDAYQSAK-------KT 763
Query: 574 YDEVARKLAMVEA 612
V +KLA V+A
Sbjct: 764 LANVEKKLAEVKA 776
>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
protein.
Length = 1248
Score = 27.5 bits (58), Expect = 0.45
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 724 PXRLPEISGCYQRHGAPPQAQRFWIRRTRHA 632
P + E + C+QR+ A P+A R IRR A
Sbjct: 844 PLLIKEDARCHQRYLADPEASRAVIRREERA 874
>AJ297931-1|CAC35451.1| 166|Anopheles gambiae hypothetical protein
protein.
Length = 166
Score = 26.6 bits (56), Expect = 0.78
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Frame = +1
Query: 454 ESERARKVLENRSLADEERMDALE-------NQLKEARFLAEEADKKYDEV 585
+ E + E + ADEE D E ++L+EAR +AEE +++ E+
Sbjct: 76 DEEHLEEEQEEEAEADEEEADESESEESEESDELEEARLVAEELEERQQEL 126
>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
precursor protein.
Length = 1623
Score = 25.8 bits (54), Expect = 1.4
Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 5/112 (4%)
Frame = +1
Query: 226 LQKKIQTIENELDQTQESLMQVNGKLEEKEKALQNAESEVA----ALNRRIQXXXXXXXX 393
++K+ +N Q+NG+L + + L+ E+++ N +
Sbjct: 1458 IKKRANATKNTARDLHHEADQLNGRLAKTDNRLEEREAQIRKDLNLTNEAKEKVGQAQLN 1517
Query: 394 XXXXXATATAKLSEASQAADESERARKVLENRSLAD-EERMDALENQLKEAR 546
+ + E S E R++ N SL D E R+ A E +L++A+
Sbjct: 1518 SNEAKSQVDKAMREVSLIMSELANLREIDVN-SLDDLERRLSAAEKELEDAQ 1568
>AJ439060-14|CAD27765.1| 471|Anopheles gambiae putative
acetyltransferase protein.
Length = 471
Score = 24.6 bits (51), Expect = 3.2
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = -2
Query: 499 PPTTCSRAPYVRARIHRRPGWPRTAWRWRSRDAPRT 392
PP S PY+ IHR P R + + PR+
Sbjct: 230 PPPPTSNEPYLVVPIHRHPELKEQCVRLINTEWPRS 265
>AJ130951-1|CAA10260.1| 189|Anopheles gambiae SG3 protein protein.
Length = 189
Score = 24.6 bits (51), Expect = 3.2
Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Frame = -2
Query: 562 PPQRGTWLPSADSRGRP--CAP--HPPTTCSRAP 473
PP R W P GRP P H PTT + AP
Sbjct: 90 PPFRPPWHPRPPFGGRPWWLRPPFHRPTTSTAAP 123
>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-containing
phosphoprotein protein.
Length = 1200
Score = 23.0 bits (47), Expect = 9.6
Identities = 24/72 (33%), Positives = 29/72 (40%)
Frame = +3
Query: 207 RRXGETASEEDPDN*KRARPDTGVSHAG*RKARREGEGSAER*VRSGCPEPTYPTAGGGP 386
R+ + EED D +R S +G R R G GS R+G AG G
Sbjct: 1047 RKRRIASDEEDSDGSQRRSRSRSRSGSGSRSRSRSGSGS-----RAG------SRAGSGS 1095
Query: 387 REVRGASRDRHR 422
R R SR R R
Sbjct: 1096 RS-RSRSRSRSR 1106
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.309 0.122 0.309
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 566,819
Number of Sequences: 2352
Number of extensions: 10579
Number of successful extensions: 31
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 74012934
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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