Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_D24
         (569 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067216-9|AAC17520.2|  646|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z35604-2|CAA84677.1|  809|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U19744-1|AAA85704.1|  809|Caenorhabditis elegans integrin beta p...    28   5.4  
AF016443-3|AAC24281.1|  395|Caenorhabditis elegans Hypothetical ...    27   9.5  
AF016443-2|AAC24272.1|  359|Caenorhabditis elegans Hypothetical ...    27   9.5  

>AF067216-9|AAC17520.2|  646|Caenorhabditis elegans Hypothetical
           protein C35E7.4 protein.
          Length = 646

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 336 AHRLVIACHLSRLLSKPAI*LLNNIGKSEKRIFDF 232
           +HRLVI    S   S P + ++N IG+   R+F F
Sbjct: 417 SHRLVIMSARSPFYSPPILLMINKIGELVIRVFHF 451


>Z35604-2|CAA84677.1|  809|Caenorhabditis elegans Hypothetical
           protein ZK1058.2 protein.
          Length = 809

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +2

Query: 8   PINCFVHK*VVYYQRWQSVHLDKKMLSICQYRLI*I*SSPSKN 136
           P  C  +K  V  Q+WQ+  L++     C++++I +   P+ N
Sbjct: 651 PTKCVEYKNCVMCQQWQTGPLNETACDQCEFKVIPVEELPNLN 693


>U19744-1|AAA85704.1|  809|Caenorhabditis elegans integrin beta
           pat-3 protein.
          Length = 809

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +2

Query: 8   PINCFVHK*VVYYQRWQSVHLDKKMLSICQYRLI*I*SSPSKN 136
           P  C  +K  V  Q+WQ+  L++     C++++I +   P+ N
Sbjct: 651 PTKCVEYKNCVMCQQWQTGPLNETACDQCEFKVIPVEELPNLN 693


>AF016443-3|AAC24281.1|  395|Caenorhabditis elegans Hypothetical
           protein C17E7.7 protein.
          Length = 395

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +1

Query: 130 KEYGSKPALNKG**LTCYLSKMSFRRVL*LPMEYKVKNS 246
           K++GS+P       LTC   KM FRRV+   +EY  K S
Sbjct: 60  KDFGSQPKQV----LTCDACKMFFRRVVTEKLEYTCKCS 94


>AF016443-2|AAC24272.1|  359|Caenorhabditis elegans Hypothetical
           protein C17E7.6 protein.
          Length = 359

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 172 LTCYLSKMSFRRVL*LPMEYKVK 240
           LTC   KM FRR++ L  +YK K
Sbjct: 41  LTCDACKMFFRRIVILKKDYKCK 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,461,100
Number of Sequences: 27780
Number of extensions: 245044
Number of successful extensions: 551
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)