Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_D24
         (569 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   4.9  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            22   4.9  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   4.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   6.5  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +3

Query: 78  KCYRYVNTD*FEYNRLLQRIRFKTCIK*RLI 170
           +C R++N    +++ +L + +FK  IK + I
Sbjct: 812 ECLRFLNEVISDFDAILDQNKFKDIIKIKTI 842


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 370 DFNRPRKIFFFCASIGY 320
           D+   RKI FFC + G+
Sbjct: 33  DYMLGRKITFFCMATGF 49


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = +1

Query: 85  IDMSIQIDLNIIVSFKEYG 141
           +D+++ +DL+I  + +EYG
Sbjct: 676 VDVTLPLDLHIQNAIREYG 694


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -3

Query: 396 NESSCRIEMILIDLEK 349
           +ESSCR ++ ++DL +
Sbjct: 206 DESSCRADIRILDLSR 221


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,769
Number of Sequences: 438
Number of extensions: 2623
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)