Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_D23
         (536 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0583 - 4321169-4321279,4321328-4321384,4321532-4321702,432...    74   8e-14
08_02_1453 - 27199228-27200579,27200712-27202646,27202905-272029...    28   5.4  
01_01_0529 + 3874865-3876285,3876352-3876367                           28   5.4  
04_04_0261 + 24007790-24009098,24009191-24011118                       27   7.2  
09_04_0741 - 19852339-19852497,19853185-19853246,19853352-198534...    27   9.5  
02_01_0426 + 3113443-3114220,3119557-3119693,3119831-3120817           27   9.5  

>03_01_0583 -
           4321169-4321279,4321328-4321384,4321532-4321702,
           4321960-4322042,4322581-4322647,4322730-4322780,
           4323203-4323265,4323363-4323413,4323500-4323556,
           4324261-4324368
          Length = 272

 Score = 73.7 bits (173), Expect = 8e-14
 Identities = 48/159 (30%), Positives = 74/159 (46%), Gaps = 9/159 (5%)
 Frame = +2

Query: 5   RPMADITCQILLKALTNFPHTDFTLCKCLLLESVVENETISQIKYLADILEQCDFAQFWN 184
           R    I  +IL+KAL   P  DF+LC  L+ E V   E    +  L+  LE   F QFW+
Sbjct: 60  RLSVQIVSRILIKALMAMPGPDFSLCLFLIPEHVQMEEQFKTLIVLSHYLETARFRQFWD 119

Query: 185 RVHQMPELCSRISGFHDSIRKFVCHVVGITFQTIDKNNLA---NLLGGIDDVTLKHWVKK 355
              +   +   + GF  +I+ +  HV+ +T+Q + +  LA   N+ G   D  L+H +  
Sbjct: 120 EASKNRNILDVVPGFEQAIQSYAIHVLSLTYQKVPRPVLAEAINIEGLALDKFLEHHIAN 179

Query: 356 YGWRDD----GSLIFIANQDENIK--TKNITEKIEFDHL 454
            GW  +      LI +   + N     KN  E + F+HL
Sbjct: 180 SGWVIEKGARSQLIVLPRNEFNHPELKKNTAETVPFEHL 218


>08_02_1453 - 27199228-27200579,27200712-27202646,27202905-27202966,
            27203525-27203545,27204305-27204344,27204345-27204792,
            27204866-27204964,27205071-27205394,27205446-27205574,
            27205657-27205875,27205976-27206194,27206436-27206669,
            27206773-27206943,27207466-27207577,27207955-27208010,
            27208083-27208181,27208901-27209134,27209258-27209311,
            27209363-27209422
          Length = 1955

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 381  RLPSSLHPYFLTQCFNVTSSIPPN 310
            +LP+SL   F+  C N+   +PPN
Sbjct: 1891 KLPASLEELFIQSCQNLVVPLPPN 1914


>01_01_0529 + 3874865-3876285,3876352-3876367
          Length = 478

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 296 NLANLLGGIDDVTLKHWVKKYGWRDDGSL 382
           N+ N  GG   +TL  W +   WR+D +L
Sbjct: 339 NIINQCGGSFSITLWSWCEDGTWREDATL 367


>04_04_0261 + 24007790-24009098,24009191-24011118
          Length = 1078

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 22/54 (40%), Positives = 29/54 (53%)
 Frame = -3

Query: 432 SVIFLVLIFSS*LAMKIRLPSSLHPYFLTQCFNVTSSIPPNRFARLFLSIV*NV 271
           SV +L L F+  L   + +PSS  P FL    N+ SSIP N  +RL  S   N+
Sbjct: 650 SVYYLDLSFNY-LQGPLPVPSS--PQFLDYSNNLFSSIPENLMSRLSSSFFLNL 700


>09_04_0741 -
           19852339-19852497,19853185-19853246,19853352-19853415,
           19853561-19853614,19853744-19853890,19854460-19854564,
           19854651-19854794,19854987-19855093,19855613-19855712,
           19855804-19855833,19856492-19856608,19856705-19856828,
           19857143-19857189,19857272-19857400,19857777-19857852,
           19858446-19858543,19858630-19858671,19858811-19859044
          Length = 612

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +2

Query: 167 FAQFWNRVHQMPELCSRISGFHDSI 241
           FA FWNR H    L   +  FH  I
Sbjct: 339 FASFWNRNHTFRALQRAVKNFHTMI 363


>02_01_0426 + 3113443-3114220,3119557-3119693,3119831-3120817
          Length = 633

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -2

Query: 421 LGFNIFILISNEDKTTVIPPSILLNPVLQ 335
           L F  FI ISN   T  +P +I+L P+LQ
Sbjct: 414 LNFLYFIDISNNKLTGDLPTAIMLMPMLQ 442


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,548,716
Number of Sequences: 37544
Number of extensions: 287960
Number of successful extensions: 631
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)