Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_D22
         (488 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat...    31   0.34 
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical...    31   0.59 
U07628-1|AAA17738.1|  515|Caenorhabditis elegans APX-1 protein.        27   7.3  
AL117204-8|CAB55123.1|  205|Caenorhabditis elegans Hypothetical ...    27   7.3  
AF101319-2|AAC69353.4|  515|Caenorhabditis elegans Anterior phar...    27   7.3  

>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
            see also lmb-protein 1 protein.
          Length = 1067

 Score = 31.5 bits (68), Expect = 0.34
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +2

Query: 110  CISGKRGRRC--CNIWHWGSVDSISGSRARFQLSGN 211
            C SG +G RC  C   HWGS   + G+  R   +GN
Sbjct: 974  CKSGYQGERCGECAQNHWGSPREVGGTCERCDCNGN 1009


>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
            protein Y45F10B.10 protein.
          Length = 1592

 Score = 30.7 bits (66), Expect = 0.59
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = -1

Query: 305  YHGSSSQL*HNAAGH*ISVVCLCSSGCASCRYSR*AETEHGSH*WSQQTPS 153
            YH +S QL     GH  +V CLCSS  +S   S   +       +SQ TP+
Sbjct: 896  YHIASEQLIGTFKGHTAAVTCLCSSNDSSLFVSTSFDKTVNVWVFSQSTPT 946


>U07628-1|AAA17738.1|  515|Caenorhabditis elegans APX-1 protein.
          Length = 515

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 21/75 (28%), Positives = 28/75 (37%)
 Frame = +2

Query: 68  ARISQKLKAHGASRCISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSI 247
           A++  +   HG  RC +G  G  C N    G   +     A  Q S   G   +RC    
Sbjct: 149 AKLHWECSTHGVRRCSAGWSGEDCSNPICAGGCSNRGRCVAPNQCSCADGFNGTRC---- 204

Query: 248 LRKFSGRQHCVTVDC 292
             +   R  CV  DC
Sbjct: 205 -EQCLPRAGCVNGDC 218


>AL117204-8|CAB55123.1|  205|Caenorhabditis elegans Hypothetical
           protein Y116A8C.17 protein.
          Length = 205

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 71  RISQKLKAHGASRCISGKRGRRC 139
           R+ +K KA   S C+S KRG+ C
Sbjct: 85  RLKKKEKAFKTSLCLSHKRGKTC 107


>AF101319-2|AAC69353.4|  515|Caenorhabditis elegans Anterior pharynx
           in excess protein1 protein.
          Length = 515

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 21/75 (28%), Positives = 28/75 (37%)
 Frame = +2

Query: 68  ARISQKLKAHGASRCISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSI 247
           A++  +   HG  RC +G  G  C N    G   +     A  Q S   G   +RC    
Sbjct: 149 AKLHWECSTHGVRRCSAGWSGEDCSNPICAGGCSNRGRCVAPNQCSCADGFNGTRC---- 204

Query: 248 LRKFSGRQHCVTVDC 292
             +   R  CV  DC
Sbjct: 205 -EQCLPRAGCVNGDC 218


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,618,284
Number of Sequences: 27780
Number of extensions: 158792
Number of successful extensions: 320
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)