Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_D20
(658 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 153 2e-38
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 69 8e-13
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 60 3e-10
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 56 3e-09
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 51 1e-07
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 50 2e-07
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 50 3e-07
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 49 5e-07
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 46 4e-06
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 46 4e-06
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 46 5e-06
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 46 6e-06
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 44 2e-05
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 44 3e-05
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 44 3e-05
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 42 6e-05
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 42 8e-05
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 42 1e-04
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 41 1e-04
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 41 1e-04
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 41 1e-04
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 40 3e-04
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 40 3e-04
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 39 6e-04
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 39 7e-04
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 38 0.001
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 37 0.003
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 37 0.003
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 36 0.004
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 36 0.005
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 36 0.007
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 35 0.012
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 34 0.021
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 34 0.021
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 33 0.036
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 33 0.048
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 33 0.048
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 32 0.084
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 31 0.19
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 31 0.19
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 30 0.34
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 29 0.59
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 29 0.78
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch... 29 0.78
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 28 1.0
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 27 1.8
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 27 3.1
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po... 26 5.5
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 25 7.3
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 25 7.3
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 25 7.3
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch... 25 9.6
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 153 bits (371), Expect = 2e-38
Identities = 72/163 (44%), Positives = 105/163 (64%), Gaps = 5/163 (3%)
Frame = +2
Query: 182 KLFVGGLSWEPTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 361
K+F+GGL+WE TD LRD+F +GE+ V D TGRSRGF F+ FK P+ +++VM+
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 362 GEHTINNKKVDPKKAKARH-----GKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDK 526
EH ++ K +DPK+A R K+FVGG+ + +++E RNFF++FG +L + DK
Sbjct: 224 -EHHLDGKIIDPKRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDK 282
Query: 527 TKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVXRATPK 655
+ +GF F+T+E+E V + P TI GK V+V RATPK
Sbjct: 283 DTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATPK 325
Score = 67.7 bits (158), Expect = 1e-12
Identities = 29/79 (36%), Positives = 53/79 (67%)
Frame = +2
Query: 419 GKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 598
GK+F+GGL+ E +DD +R++F +FG +L + D T + +GF F+TF++ + VN+++
Sbjct: 163 GKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVM- 221
Query: 599 TPKRTIGGKEVDVXRATPK 655
+ + + GK +D RA P+
Sbjct: 222 SKEHHLDGKIIDPKRAIPR 240
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 68.5 bits (160), Expect = 8e-13
Identities = 50/180 (27%), Positives = 81/180 (45%), Gaps = 23/180 (12%)
Frame = +2
Query: 185 LFVGGLSWEPTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA- 361
+FVG LSW D+ L F YG I V D +GRS+G+ ++ F+ PE+ +AA
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324
Query: 362 GEHTINNKKV-----DPKK------AKARHGK-----------IFVGGLSSEISDDEIRN 475
G I+ + V +P+ A+ R G +FVG LS ++D++
Sbjct: 325 GTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLST 384
Query: 476 FFSEFGTILXVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVXRATPK 655
F G I + +P D + KGF ++TF ++ I G+ + +TP+
Sbjct: 385 AFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFIAGRPCRLDFSTPR 444
Score = 56.8 bits (131), Expect = 3e-09
Identities = 26/72 (36%), Positives = 41/72 (56%)
Frame = +2
Query: 161 QVRAAAXKLFVGGLSWEPTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 340
Q+ + +FVG LS+ T+ +L FG G+I+SI + TDP +GR +GF ++ F +S
Sbjct: 360 QLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDS 419
Query: 341 IDKVMAAGEHTI 376
K + H I
Sbjct: 420 AKKCVEMNGHFI 431
Score = 43.2 bits (97), Expect = 3e-05
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +2
Query: 425 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCFITFESEQVVN-DLLKT 601
+FVG LS + D + F E+GTI+ + D + KG+ ++ FE+ + +
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324
Query: 602 PKRTIGGKEVDVXRATPKP 658
+ I G+ V++ + P+P
Sbjct: 325 GTKEIDGRMVNLDLSNPRP 343
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 60.1 bits (139), Expect = 3e-10
Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 8/142 (5%)
Frame = +2
Query: 185 LFVGGLSWEPTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 364
L+VG L T+ L + F + G + SI V D T RS G+A++ F E +K +
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 365 EHTINN--------KKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPF 520
+T+ + DP K G +F+ L I + + + FS FG IL ++
Sbjct: 142 NYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAV 201
Query: 521 DKTKNQRKGFCFITFESEQVVN 586
D+ N KG+ F+ F+S + N
Sbjct: 202 DELGN-AKGYGFVHFDSVESAN 222
Score = 45.6 bits (103), Expect = 6e-06
Identities = 21/57 (36%), Positives = 32/57 (56%)
Frame = +2
Query: 185 LFVGGLSWEPTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 355
LF+ L E D+ L+ F A+G I S + TD G+S+GF F+ + PE +K +
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAV 421
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 56.4 bits (130), Expect = 3e-09
Identities = 24/63 (38%), Positives = 39/63 (61%)
Frame = +2
Query: 185 LFVGGLSWEPTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 364
LFVG L +E TD +L++HFG G+I + + T +TG+ +GF F+ F ++ K M G
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAMELG 289
Query: 365 EHT 373
++
Sbjct: 290 HNS 292
Score = 32.7 bits (71), Expect = 0.048
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 425 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCFITF 565
+FVG L E +D +++ F + G I V + + + KGF F+ F
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 51.2 bits (117), Expect = 1e-07
Identities = 24/77 (31%), Positives = 41/77 (53%)
Frame = +2
Query: 137 KLXTVLXPQVRAAAXKLFVGGLSWEPTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAF 316
++ +V P + +FVG L++E ++ L +FG G I+ + + DP T +GFA+
Sbjct: 256 RVDSVSHPMPQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAY 315
Query: 317 IVFKAPESIDKVMAAGE 367
I FK +DK + E
Sbjct: 316 IQFKDTMGVDKALLLNE 332
Score = 40.7 bits (91), Expect = 2e-04
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Frame = +2
Query: 425 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCFITFESEQVVND-LLKT 601
+FVG L+ E ++ + +F + G+I V + D N KGF +I F+ V+ LL
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLN 331
Query: 602 PKRTIGGKEVDVXRA-TPKP 658
K+ G+ + + RA + KP
Sbjct: 332 EKKMPEGRTLRIMRAKSTKP 351
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 50.4 bits (115), Expect = 2e-07
Identities = 25/79 (31%), Positives = 42/79 (53%)
Frame = +2
Query: 365 EHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQRK 544
E TI K + K + + G ++VG L + ++R +FS+FG +L + M ++ K
Sbjct: 87 EKTIKKKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSK 146
Query: 545 GFCFITFESEQVVNDLLKT 601
+ FI FES V N + +T
Sbjct: 147 HYAFIEFESLDVANVVAET 165
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 50.0 bits (114), Expect = 3e-07
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Frame = +2
Query: 176 AXKLFVGGLSWEPTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 355
A ++VG + + T +EL+ HF + G + + + D TG +GFA+I F P + +
Sbjct: 54 AQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL 113
Query: 356 AAGEHTINNK--KVDPKK 403
++ + KV PK+
Sbjct: 114 LLNGSMLHERPLKVTPKR 131
Score = 35.9 bits (79), Expect = 0.005
Identities = 15/57 (26%), Positives = 31/57 (54%)
Frame = +2
Query: 425 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCFITFESEQVVNDLL 595
++VG + ++ +E+++ F+ G++ V + DK KGF +I F +V + L
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL 113
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 49.2 bits (112), Expect = 5e-07
Identities = 29/111 (26%), Positives = 57/111 (51%), Gaps = 5/111 (4%)
Frame = +2
Query: 335 ESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEM 514
+ ++ + A H + P + +A ++FVG LS+ EIR+ F GT+ V +
Sbjct: 17 DQVEASVDAAVHASAEQSNTPAQ-QADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTI 75
Query: 515 PFDKTKNQRK----GFCFITFESEQVVNDLLKTPK-RTIGGKEVDVXRATP 652
PF + + + G F+TF +++ V+ ++T +T+ +E+ V +A P
Sbjct: 76 PFRRVRRGTRLVPSGIAFVTFNNQEDVDKAIETLNGKTLDDREIVVQKARP 126
Score = 34.3 bits (75), Expect = 0.016
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Frame = +2
Query: 158 PQVRAAAXKLFVGGLSWEPTDKELRDHFGAYGEIESINVKTDPNTGRSR----GFAFIVF 325
P +A ++FVG LS E+R F G + + + +R G AF+ F
Sbjct: 37 PAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTF 96
Query: 326 KAPESIDKVMAAGEHTINNKKVDPKK 403
E +DK + T+N K +D ++
Sbjct: 97 NNQEDVDKAI----ETLNGKTLDDRE 118
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 46.4 bits (105), Expect = 4e-06
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Frame = +2
Query: 422 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLK 598
++F+ L+ ++D++++ F FG + V MP DK N KGF +I F +++ V L+
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383
Query: 599 TPKRTIGGKEVDVXRA 646
+ G+ + V A
Sbjct: 384 LDAKPFQGRLLHVLPA 399
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 46.4 bits (105), Expect = 4e-06
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Frame = +2
Query: 185 LFVGGLSWEPTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES--IDKVMA 358
LFVG L + + + L+ HF G++ S+ + TD +GR +G+AF+ F P++ I K +
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINPKTDVISKALK 153
Query: 359 AGEHTI-NNKKVDPKKAKARHGK 424
HTI +K++ + GK
Sbjct: 154 F-HHTIYKERKINIELTAGGGGK 175
Score = 42.3 bits (95), Expect = 6e-05
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Frame = +2
Query: 365 EHTINNKKVDPKKAKARHGK-------IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFD 523
+H+++N K+K + GK +FVG L + S + ++ F G + V +P D
Sbjct: 67 KHSVSNPPHKTLKSKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTD 126
Query: 524 KTKNQRKGFCFITF 565
KT ++KG+ F+ F
Sbjct: 127 KTSGRQKGYAFVEF 140
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 46.0 bits (104), Expect = 5e-06
Identities = 27/105 (25%), Positives = 55/105 (52%), Gaps = 4/105 (3%)
Frame = +2
Query: 344 DKVMAAGEHTINNKKVD---PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEM 514
D+V E T +KK P+ ++ +FV G++S + +DE++ FS+FGT+ V +
Sbjct: 73 DEVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRI 132
Query: 515 PFDKTKNQRKGFCFITFES-EQVVNDLLKTPKRTIGGKEVDVXRA 646
+ +GF F++F + E+ + + + G+ ++V +A
Sbjct: 133 MREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKA 177
Score = 39.1 bits (87), Expect = 6e-04
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +2
Query: 185 LFVGGLSWEPTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 337
LFV G++ + EL+ F +G + + + +P T SRGF F+ F E
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVE 153
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 45.6 bits (103), Expect = 6e-06
Identities = 22/79 (27%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Frame = +2
Query: 416 HGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCFITF-ESEQVVNDL 592
H ++FVG L ++++D+ + FSE+ +++ ++ D+ + + +GF F++F +S+Q +
Sbjct: 29 HFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDR-EGKTRGFGFVSFKDSDQFLKAW 87
Query: 593 LKTPKRTIGGKEVDVXRAT 649
+ + IG + V + RAT
Sbjct: 88 REKNGKYIGSRPVKLSRAT 106
Score = 35.1 bits (77), Expect = 0.009
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +2
Query: 182 KLFVGGLSWEPTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 328
+LFVG L + D+ L F Y + V D G++RGF F+ FK
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRD-REGKTRGFGFVSFK 78
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 44.0 bits (99), Expect = 2e-05
Identities = 24/75 (32%), Positives = 40/75 (53%)
Frame = +2
Query: 191 VGGLSWEPTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEH 370
VG LS++ T+ +L D FG + SI + DP T RSRGF ++ F+ +++ +A
Sbjct: 98 VGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGE 155
Query: 371 TINNKKVDPKKAKAR 415
+ + V A+ R
Sbjct: 156 DLMGRPVRITVAEPR 170
Score = 35.9 bits (79), Expect = 0.005
Identities = 17/75 (22%), Positives = 39/75 (52%)
Frame = +2
Query: 431 VGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKR 610
VG LS +++++++ +FF E + + + D + +GF ++ FE+ ++ L
Sbjct: 98 VGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGE 155
Query: 611 TIGGKEVDVXRATPK 655
+ G+ V + A P+
Sbjct: 156 DLMGRPVRITVAEPR 170
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 43.6 bits (98), Expect = 3e-05
Identities = 36/149 (24%), Positives = 67/149 (44%), Gaps = 20/149 (13%)
Frame = +2
Query: 185 LFVGGLSWEPTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA-A 361
+FV L+ T +EL D F G + + D +GRS+G A++ F +S+ +A +
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIALS 301
Query: 362 GEHTINNKKV-----DPKKAKARHG--------------KIFVGGLSSEISDDEIRNFFS 484
G+ + + K KAR ++ V + ++D++++ F
Sbjct: 302 GKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTDEDVKAIFE 361
Query: 485 EFGTILXVEMPFDKTKNQRKGFCFITFES 571
FG I V + D +N+ KGF +I + +
Sbjct: 362 PFGDIEFVHLQRD-DQNRSKGFGYIQYRN 389
Score = 35.9 bits (79), Expect = 0.005
Identities = 16/53 (30%), Positives = 34/53 (64%)
Frame = +2
Query: 182 KLFVGGLSWEPTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 340
+L V + + TD++++ F +G+IE ++++ D + RS+GF +I ++ P S
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRD-DQNRSKGFGYIQYRNPIS 392
Score = 34.3 bits (75), Expect = 0.016
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +2
Query: 425 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCFITFESEQVVNDLLK-T 601
+FV L++ ++ E+ +FF + G + ++ DK + KG ++ F E V + +
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIALS 301
Query: 602 PKRTIG 619
KR +G
Sbjct: 302 GKRLLG 307
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 43.6 bits (98), Expect = 3e-05
Identities = 17/51 (33%), Positives = 32/51 (62%)
Frame = +2
Query: 425 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCFITFESEQ 577
I++G L ++++D+I FSEFG + + + DK + KGF F+ +E ++
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQR 83
Score = 39.5 bits (88), Expect = 4e-04
Identities = 16/52 (30%), Positives = 31/52 (59%)
Frame = +2
Query: 185 LFVGGLSWEPTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 340
+++G L ++ + ++ F +GE IN+ D TG+S+GFAF+ ++ S
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRS 84
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 42.3 bits (95), Expect = 6e-05
Identities = 18/48 (37%), Positives = 30/48 (62%)
Frame = +2
Query: 185 LFVGGLSWEPTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 328
+F+ LS++ + ++ F YG IE I V + TG+S G+AF+VF+
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFE 149
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 41.9 bits (94), Expect = 8e-05
Identities = 19/79 (24%), Positives = 41/79 (51%)
Frame = +2
Query: 173 AAXKLFVGGLSWEPTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 352
A +FVG + ++ +++++ + F G +++ + DP TG +G+ F F E+
Sbjct: 5 AGNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSET---- 60
Query: 353 MAAGEHTINNKKVDPKKAK 409
A +NN ++ P+K +
Sbjct: 61 TAMAVRKLNNSELGPRKIR 79
Score = 33.9 bits (74), Expect = 0.021
Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +2
Query: 425 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCFIT-FESEQVVNDLLKT 601
+FVG + ++S+ ++ F++ G + ++ D KG+ F F+SE + K
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 602 PKRTIGGKEVDV 637
+G +++ V
Sbjct: 69 NNSELGPRKIRV 80
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 41.5 bits (93), Expect = 1e-04
Identities = 25/69 (36%), Positives = 37/69 (53%)
Frame = +2
Query: 185 LFVGGLSWEPTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 364
LFV L+++ +L + F G I+ V T+P TG +RG+ F+ F E D AA
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLE--DAQRAAK 64
Query: 365 EHTINNKKV 391
E + NKK+
Sbjct: 65 E--LKNKKL 71
Score = 38.7 bits (86), Expect = 7e-04
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +2
Query: 185 LFVGGLSWEPTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 328
+FV L +E T++EL +HF +G + + DP T RS G FI F+
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFR 326
Score = 36.7 bits (81), Expect = 0.003
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +2
Query: 425 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 604
+FV L+ + D++ NFFS+ G I + + + +G+ F+TF + K
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 605 K-RTIGGKEVDVXRATPK 655
K + + G+ + + ATP+
Sbjct: 67 KNKKLHGRILRLDFATPR 84
Score = 31.9 bits (69), Expect = 0.084
Identities = 19/89 (21%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Frame = +2
Query: 338 SIDKVMAAGEHTINNKKVDP--KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVE 511
++D V +G+ + + ++ + + +FV L E ++ E+ N F +FG + +
Sbjct: 248 NVDDVEDSGDSSSDKNSINHEIRDNEGLEDTVFVRNLLFECTEQELYNHFRQFGPLAYAK 307
Query: 512 MPFDKTKNQRKGFCFITFESEQVVNDLLK 598
+ D ++ G FI F E+ + L+
Sbjct: 308 LVKDPATDRSLGRGFIKFRYEKDCQNCLE 336
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 41.1 bits (92), Expect = 1e-04
Identities = 20/54 (37%), Positives = 32/54 (59%)
Frame = +2
Query: 182 KLFVGGLSWEPTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 343
++FV +S T ++LR HF ++GE+ +++K +P TG S G I F SI
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSI 148
Score = 33.5 bits (73), Expect = 0.027
Identities = 16/79 (20%), Positives = 38/79 (48%)
Frame = +2
Query: 422 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 601
++FV +S ++ +++R F FG + +++ + G C I+F+ ++ +
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSISVAAHS 154
Query: 602 PKRTIGGKEVDVXRATPKP 658
K I ++ + R + KP
Sbjct: 155 AK--IAVQQANGLRFSGKP 171
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 41.1 bits (92), Expect = 1e-04
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Frame = +2
Query: 338 SIDKVMAAGEHTINNKKVDPKKAKA--RHGKIFVGGLSSEISDDEIRNFFSEFGTILXVE 511
SI ++ A + I K D + A + ++VG LS ++++I FS+ G I +
Sbjct: 3 SITRLDAVSPYLIRRFKNDLRALDAVKQSNCVYVGNLSFYTTEEQIYALFSKCGEIRRII 62
Query: 512 MPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRT 613
M D+ GFCF+ + Q D LK RT
Sbjct: 63 MGVDRFTKTPCGFCFVEYFENQDALDSLKYISRT 96
Score = 31.9 bits (69), Expect = 0.084
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Frame = +2
Query: 185 LFVGGLSWEPTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFI-VFKAPESIDKVMAA 361
++VG LS+ T++++ F GEI I + D T GF F+ F+ +++D +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYI 93
Query: 362 GEHTINNKKVDPKKAKA-RHGKIFVGGLSSEISDDEIRNFF 481
+++ + + G+ + G S DE+R F
Sbjct: 94 SRTSLDERIIRADLDHGYEEGRQYGRGASGGQVRDEMREEF 134
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 41.1 bits (92), Expect = 1e-04
Identities = 19/47 (40%), Positives = 30/47 (63%)
Frame = +2
Query: 185 LFVGGLSWEPTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 325
L V LS + ++ELRD F +G I+ + + D TGR++GFAF+ +
Sbjct: 204 LRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
Score = 37.5 bits (83), Expect = 0.002
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +2
Query: 398 KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCFITF 565
K+ + + V LS + ++E+R+ F FG I V + DK + KGF F+++
Sbjct: 195 KRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 39.9 bits (89), Expect = 3e-04
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Frame = +2
Query: 185 LFVGGLSWEPTDKELRDHFGAYGE-IESINVKTDPNTGRSRGFAFIVFKAPESID-KVMA 358
LFVG L ++ L D F A G+ +++ V D N GRS+G+ F+ + + E+ D + A
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDEN-GRSKGYGFVSYDSFETADAAIEA 159
Query: 359 AGEHTINNKKVDPKKAKARHGK 424
+ NK + A R GK
Sbjct: 160 MNNQFLMNKPITVSYAFKREGK 181
Score = 32.7 bits (71), Expect = 0.048
Identities = 26/137 (18%), Positives = 55/137 (40%), Gaps = 8/137 (5%)
Frame = +2
Query: 185 LFVGGLSWEPTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV-MAA 361
+++G L + TD L + G + +I++ D GF F F + ++
Sbjct: 13 IYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQIL 72
Query: 362 GEHTINNKKVDPKKAKARHG-------KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPF 520
+ + K + +A G +FVG L + + + + FS G ++
Sbjct: 73 NQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVA 132
Query: 521 DKTKNQRKGFCFITFES 571
+ KG+ F++++S
Sbjct: 133 RDENGRSKGYGFVSYDS 149
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 39.9 bits (89), Expect = 3e-04
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = +2
Query: 395 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMP 517
P+ A + +FVGGLS +S++E++ F FG I+ V++P
Sbjct: 295 PQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIP 335
Score = 35.9 bits (79), Expect = 0.005
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +2
Query: 167 RAAAXKLFVGGLSWEPTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVF 325
+A+ +FVG LS + ++ F + Y +S + TDP T SRG+ F+ F
Sbjct: 182 KASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRF 235
Score = 27.9 bits (59), Expect = 1.4
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +2
Query: 185 LFVGGLSWEPTDKELRDHFGAYGEIESINVKTDPNTG 295
+FVGGLS +++EL+ F +GEI + VK P G
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEI--VYVKIPPGKG 339
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 39.1 bits (87), Expect = 6e-04
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Frame = +2
Query: 185 LFVGGLSWEPTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK----APESIDKV 352
++VG L W +D+ L D F G + + +P TGRS+GF + F+ A SI+K+
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKL 340
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 38.7 bits (86), Expect = 7e-04
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +2
Query: 425 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDK 526
+FVGGL+S +S+ +++ F FG IL +++PF K
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGK 332
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 37.9 bits (84), Expect = 0.001
Identities = 19/48 (39%), Positives = 31/48 (64%)
Frame = +2
Query: 185 LFVGGLSWEPTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 328
LF+ LS++ T +E+ D FG YG + I + NT ++RG AF+V++
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRL---GNTVQTRGTAFVVYE 58
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 36.7 bits (81), Expect = 0.003
Identities = 22/55 (40%), Positives = 30/55 (54%)
Frame = +2
Query: 185 LFVGGLSWEPTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 349
LFV L+ D++L F +G+I S V D TG S +AFI F ES++K
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEK 300
Score = 31.9 bits (69), Expect = 0.084
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +2
Query: 425 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCFITFESEQVV 583
+FV L+ D+++ FS FG I+ ++ DK + FI F++++ V
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESV 298
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 36.7 bits (81), Expect = 0.003
Identities = 16/78 (20%), Positives = 41/78 (52%)
Frame = +2
Query: 182 KLFVGGLSWEPTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 361
+L+V + ++ +K++ F YG++ES+ + N + +GF ++V + + ++A
Sbjct: 758 ELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFN--QHKGFGYVVMTTNQDAENALSA 815
Query: 362 GEHTINNKKVDPKKAKAR 415
+ N+ ++ +K R
Sbjct: 816 AGKQLGNRVLNVVLSKPR 833
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 36.3 bits (80), Expect = 0.004
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +2
Query: 425 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLKT 601
I V L+ ++ + I F +G I + MP K KG+C+I + +Q N + K
Sbjct: 101 ILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKM 160
Query: 602 PKRTIGGKEVDV 637
+ G+E+ V
Sbjct: 161 NNAELDGEELFV 172
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 35.9 bits (79), Expect = 0.005
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = +2
Query: 185 LFVGGLSWEPTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 334
++VG + +E ++++ D F G ++S + DP +G+ +G+ F + P
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDP 56
Score = 30.7 bits (66), Expect = 0.19
Identities = 10/47 (21%), Positives = 26/47 (55%)
Frame = +2
Query: 425 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCFITF 565
++VG + E++++++ + F + G + ++ D Q KG+ F +
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEY 53
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 35.5 bits (78), Expect = 0.007
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Frame = +2
Query: 374 INNKKVD-PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXV-------------E 511
+NN K+ P + + I+VG + S +SD+EI FS++G + +
Sbjct: 1 MNNSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKA 60
Query: 512 MPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVXRATPKP 658
PF KN + + F+ F + + + ++LK K T+G +++ + P
Sbjct: 61 KPFKPPKNGVQ-YGFVKFVNAESIEEVLKDAKGMTLGQRKLTIKARVVNP 109
Score = 33.1 bits (72), Expect = 0.036
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +2
Query: 224 ELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKK 403
+L D F +G I S + PN+G S+G+ F+ F+ E+ + T+N V K+
Sbjct: 399 QLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEA----AVRAKDTLNGMMVGKKR 454
Score = 31.1 bits (67), Expect = 0.15
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 13/94 (13%)
Frame = +2
Query: 185 LFVGGLSWEPTDKELRDHFGAYGEIESI----------NVKTDPNTGRSRG--FAFIVFK 328
++VG + +D+E+ HF YG++ESI K P G + F+ F
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAKPFKPPKNGVQYGFVKFV 78
Query: 329 APESIDKVMA-AGEHTINNKKVDPKKAKARHGKI 427
ESI++V+ A T+ +K+ K K+
Sbjct: 79 NAESIEEVLKDAKGMTLGQRKLTIKARVVNPAKL 112
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 34.7 bits (76), Expect = 0.012
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +2
Query: 422 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTK-NQRKGFCFITFESEQ 577
+I+VGGLSS I ++ + FS FG++ +E+ T + F ++ F +++
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDE 58
Score = 31.1 bits (67), Expect = 0.15
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +2
Query: 182 KLFVGGLSWEPTDKELRDHFGAYGEIESINV--KTDPNTGRSRGFAFIVFKAPE 337
+++VGGLS +L F +G + ++ + K+ P G + FA++ F+ E
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTP-VGTIQRFAYLNFRTDE 58
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 33.9 bits (74), Expect = 0.021
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +2
Query: 422 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCFITFES 571
KI++ L + +D++ FG +L ++ + KGFCF F++
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKN 360
Score = 29.5 bits (63), Expect = 0.45
Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +2
Query: 182 KLFVGGLSWEPTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 361
K+++ L + ++ + +G++ S + + G S+GF F FK P + ++
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISG 370
Query: 362 --GEHTINNK 385
G+ T NK
Sbjct: 371 LDGKDTYGNK 380
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 33.9 bits (74), Expect = 0.021
Identities = 18/67 (26%), Positives = 34/67 (50%)
Frame = +2
Query: 377 NNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCF 556
+NKK + ++ +R +++ GL SD+ + + + FG + + D N KG+ F
Sbjct: 283 DNKKSN-MESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGF 341
Query: 557 ITFESEQ 577
FE E+
Sbjct: 342 ACFEEEK 348
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 33.1 bits (72), Expect = 0.036
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 170 AAAXKLFVGGLSWEPTDKELRDHFGAYGEIESINVKTDPN 289
AA+ +F+G L +KE+ + FG +G+IE I + + N
Sbjct: 296 AASRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKN 335
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 425 IFVGGLSSEISDDEIRNFFSEFGTILXVEM 514
+F+G L S + EI F +FG I +++
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKI 330
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 32.7 bits (71), Expect = 0.048
Identities = 17/88 (19%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Frame = +2
Query: 398 KKAKARHGKIF-VGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCFITFESE 574
+ AK+ G I V G+ E +++++ + F++FG + + + D+ KG+ I + +
Sbjct: 2 RPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATL 61
Query: 575 QVVNDLLKTPKRTIGGKEVDVXRATPKP 658
+ + ++ ++++V A +P
Sbjct: 62 EQAQKAVDEKNLSLLDEKLEVDFAFLEP 89
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 32.7 bits (71), Expect = 0.048
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +2
Query: 431 VGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKR 610
V L ++ + ++ + F F I + M +D+ + +G C + FE+ Q D KT +
Sbjct: 89 VENLHYQVLEKDVLSLFENFHPIRVI-MNYDRA-GRSEGSCDVYFETSQDAEDAQKTLQS 146
Query: 611 T-IGGKEVDVXRATP 652
T + G E+ + + +P
Sbjct: 147 TNLKGSEIQISKKSP 161
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 31.9 bits (69), Expect = 0.084
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +2
Query: 221 KELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP-ESIDKVMAAGEHTINNKKVDP 397
++L + F +G I+S + + P+T S+G+ F+ F P E++ + K++
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFV 494
Query: 398 KKAKARHGK 424
A+ R +
Sbjct: 495 NYAEKREDR 503
Score = 27.1 bits (57), Expect = 2.4
Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 6/80 (7%)
Frame = +2
Query: 353 MAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTK 532
M A E K KK + I+VG L S ++ F FG M + K
Sbjct: 1 MIALEKLSEKNKRSTKKCEI---SIYVGNLPSTCQSSDLHELFEPFGNFSKFHM-LSRKK 56
Query: 533 NQRKG------FCFITFESE 574
N+ F FITFE++
Sbjct: 57 NKSTDSKSPTLFAFITFENK 76
Score = 25.0 bits (52), Expect = 9.6
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Frame = +2
Query: 425 IFVGGLSSEI--SDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCFIT----FESEQVVN 586
+FV L I + ++ FS+FG I + + KG+ F++ FE+ Q +N
Sbjct: 421 LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAIN 480
Query: 587 DL 592
L
Sbjct: 481 TL 482
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 30.7 bits (66), Expect = 0.19
Identities = 16/66 (24%), Positives = 31/66 (46%)
Frame = +2
Query: 455 SDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVD 634
+++ IR+FFS+FG + VE+ N C + F S + N+ +P+ + +
Sbjct: 255 NEENIRSFFSKFGVLEKVEL------NPTHHSCVLEFTSHEAANNAWSSPEPIFNNRFIK 308
Query: 635 VXRATP 652
+ P
Sbjct: 309 IFWYNP 314
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 30.7 bits (66), Expect = 0.19
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +2
Query: 182 KLFVGGLSWEPTDKELRDHF-GAYGEIESINVKTDPNTGRSRGFAFIVFKAP 334
K+ V L + T+ ++++ F + G + +++ PN GRS+G A I+F P
Sbjct: 56 KIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPN-GRSKGIATIIFSRP 106
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 29.9 bits (64), Expect = 0.34
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = +2
Query: 443 SSEISDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCFITFES 571
+ +++D +R+ +S FGT+ V + D +K ++ + I FE+
Sbjct: 176 ADQVNDAYLRSIYSSFGTLQNVVIQKDISKEKKYVYSIIVFET 218
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 29.1 bits (62), Expect = 0.59
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Frame = +2
Query: 185 LFVGGLSWEPTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 364
LF+ G+ E D ++R HF YG ++S+ + R++ AF+ FK S + +AA
Sbjct: 214 LFLIGVEDELADYKIRKHFEQYGPLKSVVC-----SHRAK-CAFVNFKTRSSAE--IAAA 265
Query: 365 EHTINNKKVDPKKAKARHGK-IFVGGLSSEISDDEI 469
N ++ + K + GK +GG E+ + ++
Sbjct: 266 ASPDGNVVIEGFRLKVQWGKPRSLGGPEGEVRNAKL 301
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 28.7 bits (61), Expect = 0.78
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 149 VLXPQVRAAAXKLFVGGLSWEPTDKELRDHFGAYGEIESINVKTDPN 289
+L Q A +F+G L T+ E+R+ +G I+ I + T+ N
Sbjct: 196 LLAVQQSGACRNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERN 242
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 425 IFVGGLSSEISDDEIRNFFSEFGTI 499
+F+G L + I++DEIR FG I
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPI 232
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +2
Query: 173 AAXKLFVGGLSWEPTDKELRDHFGAYGEIESINVKTDPN 289
A+ +++G T + L++ F +GEIE +N + N
Sbjct: 412 ASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKN 450
>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
45|Schizosaccharomyces pombe|chr 1|||Manual
Length = 558
Score = 28.7 bits (61), Expect = 0.78
Identities = 15/72 (20%), Positives = 32/72 (44%)
Frame = +2
Query: 230 RDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAK 409
R++ GE+E V +P + ++F K+ A +++ +++DP K
Sbjct: 344 RENLLEVGEVEQSLVCNEPQSTDFNDIQRLLFSNISENTKLRLAALYSLRFERIDPAKVS 403
Query: 410 ARHGKIFVGGLS 445
A + GG++
Sbjct: 404 ALQQMLIAGGVN 415
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.3 bits (60), Expect = 1.0
Identities = 9/37 (24%), Positives = 20/37 (54%)
Frame = +2
Query: 389 VDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 499
+ P K +F+GG++ + + +R+ F FG++
Sbjct: 396 IPPDSIKVYSRTLFLGGITRSVREPVLRSMFERFGSV 432
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 302 RGFAFIVFKAPESIDKVMAAGEHTINNKK 388
RGFA IVF A S ++V G H +N+ K
Sbjct: 187 RGFAEIVFCAIASNEQVRGYGSHLMNHLK 215
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = +2
Query: 425 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 604
++V L I+ E+R++F FG IL ++ N + + +EQ +N++ P
Sbjct: 178 VYVHQLPENITTQELRSYFLHFGEILYTQV----NNNSGRIVFAQRYFAEQAINEMNNFP 233
>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -1
Query: 409 FSLLWVYFLVVDGVFTSSHDLVY*LWGLKHNEGKPS*SACVWICLYINTLYFTV 248
F+LL L + GV Y ++ + H+ G P WICL+ +F +
Sbjct: 85 FALLSSQPLCIVGVTGPITVFNYTVYDIMHDRGTPYFPFLCWICLWSMIFHFII 138
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 182 KLFVGGLSWEPTDKELRDHFGAYGEI 259
+LFVG + + T +++ D F YG+I
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQI 30
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 25.4 bits (53), Expect = 7.3
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +2
Query: 395 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKN 535
P++ + +GK L+S ++E+RN FSEF L E+ F+ ++
Sbjct: 946 PEEIRKLNGKKI---LNSFFDNEELRNEFSEFIQHLESEVSFNSLRS 989
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.4 bits (53), Expect = 7.3
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = -1
Query: 445 AESSDKNLPMSCFSLLWVYFLVVDGVFTSSHDLVY*LWGLKHNEGKPS*SACVWICLYIN 266
++ L M C +++ F +F S ++V +GLK++ SA V I + N
Sbjct: 1191 SDEETTQLAMDCLAVMAKRFSASPELFISPIEVVSGPYGLKNSARDVQVSAIVCITVLTN 1250
Query: 265 TL 260
TL
Sbjct: 1251 TL 1252
>SPBC30D10.08 |mgm101||mitochondrial nucleoid
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 267
Score = 25.0 bits (52), Expect = 9.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 197 GLSWEPTDKELRDHFGAYGEIESINVKTD 283
GLS +P KE+ D A E++ I +K D
Sbjct: 103 GLSSQPFSKEICDLLTAPLEVDDIEIKPD 131
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,330,275
Number of Sequences: 5004
Number of extensions: 44258
Number of successful extensions: 234
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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