Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_D18
(828 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 69 8e-13
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 46 7e-06
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 35 0.016
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 35 0.016
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S... 34 0.021
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi... 30 0.35
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 28 1.9
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 27 4.3
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s... 26 7.5
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ... 26 7.5
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c... 26 7.5
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 25 9.9
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 68.9 bits (161), Expect = 8e-13
Identities = 61/228 (26%), Positives = 101/228 (44%), Gaps = 10/228 (4%)
Frame = +3
Query: 168 LEIPLMST-DEVIDLDPEQLPS-GDEVLSILQQERSQLNVWINVALAYYKQKKIDDFLKI 341
+E+PL+ D+ +++D LPS E+ IL E++ W A YY + + + I
Sbjct: 14 IEVPLLGQEDQSVEIDCSSLPSDATELCEILVNEQAPREFWTKFAHEYYIRGLREQAILI 73
Query: 342 LEASRTDANIDYRDFERDQMRALDM-LAAYYVQXXXXXXXXXXXXXXXXXATLLYTMADK 518
L++ + + + L+ +AA Y+ + T +
Sbjct: 74 LKSGLETLK------DSESLCILNANIAAIYLSMAREAMLKKDTDLRDEQLRNVRTYLEA 127
Query: 519 IIMYDQ----NHLLGRAYFCLL---EGDKMEQADAQFNFVLNQSPNNVPSLLGKACIAFN 677
D N LL Y LL + + +E A F+FVL +S N+ LGKA I +
Sbjct: 128 ANNIDSKSEINVLLHGIYRILLNPTDKESLENAARCFDFVLQKSGGNILGFLGKARILYA 187
Query: 678 RKDYRGALAFYKKALXTNPDSPAALRLGMGHCFMKLNNQEKAXMAFER 821
+ +YR AL Y++AL +NP R+G+G CF L+ + A A+ R
Sbjct: 188 KGNYRSALKLYQRALVSNPQFKPDPRIGIGLCFWNLDMKTDALSAWTR 235
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 46.0 bits (104), Expect = 7e-06
Identities = 22/83 (26%), Positives = 46/83 (55%)
Frame = +3
Query: 579 DKMEQADAQFNFVLNQSPNNVPSLLGKACIAFNRKDYRGALAFYKKALXTNPDSPAALRL 758
D ++A + + L Q+P ++P++L A I NR+ + A+ +Y+ L +P +
Sbjct: 348 DDQDKALSAYESALRQNPYSIPAMLQIATILRNREQFPLAIEYYQTILDCDP-KQGEIWS 406
Query: 759 GMGHCFMKLNNQEKAXMAFERAL 827
+GHC++ ++ +A A+ +AL
Sbjct: 407 ALGHCYLMQDDLSRAYSAYRQAL 429
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 34.7 bits (76), Expect = 0.016
Identities = 21/79 (26%), Positives = 33/79 (41%)
Frame = +3
Query: 591 QADAQFNFVLNQSPNNVPSLLGKACIAFNRKDYRGALAFYKKALXTNPDSPAALRLGMGH 770
QA ++ +L P N +LLGK + + Y A+ L + + P+ L
Sbjct: 448 QAMHYYDILLAADPRNYHALLGKGLVQIENEQYSDAVKTLGLLLDDHENDPSLSELSW-- 505
Query: 771 CFMKLNNQEKAXMAFERAL 827
C+ K N KA E+ L
Sbjct: 506 CYFKTGNLPKAISTVEKCL 524
>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 34.7 bits (76), Expect = 0.016
Identities = 28/98 (28%), Positives = 44/98 (44%)
Frame = +3
Query: 528 YDQNHLLGRAYFCLLEGDKMEQADAQFNFVLNQSPNNVPSLLGKACIAFNRKDYRGALAF 707
Y+ + LG Y L+ + +QAD F +PNN + I KDY+ AL F
Sbjct: 499 YNAWYGLGMVY---LKTGRNDQADFHFQRAAEINPNNSVLITCIGMIYERCKDYKKALDF 555
Query: 708 YKKALXTNPDSPAALRLGMGHCFMKLNNQEKAXMAFER 821
Y +A + S A R + L++ +KA + E+
Sbjct: 556 YDRACKLDEKSSLA-RFKKAKVLILLHDHDKALVELEQ 592
>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
Klp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 34.3 bits (75), Expect = 0.021
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +1
Query: 256 NKNAHNSMFGLMLHSHITNKRKSMTSSRSWKHHVQMPTLTIGISKEIR 399
+++A NS+ L LHS++ K KS SS+ W H P +T + + +R
Sbjct: 718 SRDARNSLTSLSLHSNVA-KNKSSHSSK-WPTHTLSPIITTALKQPVR 763
>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 30.3 bits (65), Expect = 0.35
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Frame = +3
Query: 546 LGRAYFCLLEGDKMEQADAQFNFVLNQSPNNVPSLLGKACIAFNRKDYRGALAFYKKALX 725
LG+ Y+ +GD ++ + FN L +P + P+ C A + Y A+ + + L
Sbjct: 527 LGKYYY--KKGDLLQAMNC-FNESLKINPLSYPTWFTYGCAALELQKYDAAMEAFSRCLS 583
Query: 726 TNP-DSPAALRLGMGHCFMKLNNQEKAXMAFERAL 827
NP D + L K + +E+A A ++ +
Sbjct: 584 INPEDGESWNNLASAMLKAKDHTKEQAWHAMQQGI 618
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 27.9 bits (59), Expect = 1.9
Identities = 17/69 (24%), Positives = 35/69 (50%)
Frame = +3
Query: 552 RAYFCLLEGDKMEQADAQFNFVLNQSPNNVPSLLGKACIAFNRKDYRGALAFYKKALXTN 731
+A + + D M++A + VL +P NV +L+ + + + + A+ +++AL +
Sbjct: 149 KAQVYIFQND-MDRAQKIAHDVLRLNPKNVEALVLRGKVMYYSGENAKAITHFQEALKLD 207
Query: 732 PDSPAALRL 758
PD A L
Sbjct: 208 PDCTTAKTL 216
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -1
Query: 120 TSLLTKIYXNVYLSRFLCMYNILKIFFFFW 31
T L + + +L+RF C+ +FF FW
Sbjct: 272 TGLTVERFFQHFLARFFCLIFFPFLFFLFW 301
>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 821
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 716 FLIKSKCPSVIFTIESYASFTEQ*RHII 633
+L SK PSV +TIE+ SF ++ H I
Sbjct: 17 YLQNSKNPSVPYTIETIVSFFQEIIHSI 44
>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 565
Score = 25.8 bits (54), Expect = 7.5
Identities = 11/44 (25%), Positives = 26/44 (59%)
Frame = +3
Query: 696 ALAFYKKALXTNPDSPAALRLGMGHCFMKLNNQEKAXMAFERAL 827
AL ++++A P + +G+C+ K++ ++A +++RAL
Sbjct: 425 ALYYFQRATALRPYDQRMWQ-ALGNCYEKIDRPQEAIKSYKRAL 467
>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 25.8 bits (54), Expect = 7.5
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -1
Query: 576 LPISRNMLYQEDGSDHT 526
LP RN LY++D DHT
Sbjct: 10 LPAERNPLYKDDTLDHT 26
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 25.4 bits (53), Expect = 9.9
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = -1
Query: 516 YPP*CTIMLPL*IVLFSYLLTSLC*LLAHSMRPTCREPASDLFRN 382
YPP I L ++F L SLC + S PT D F+N
Sbjct: 584 YPPNNVIYLFSLHIIFHNELESLCGITQSSFIPTIMRQLLDWFKN 628
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,414,555
Number of Sequences: 5004
Number of extensions: 70495
Number of successful extensions: 193
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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