Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_D17
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    46   6e-06
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    27   2.2  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   3.9  

>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 46.0 bits (104), Expect = 6e-06
 Identities = 20/55 (36%), Positives = 29/55 (52%)
 Frame = +1

Query: 604 HGLFQHVCLEYELVLADGSVVNCXKDENADLFYAVPWSYGTLGFLTSXVIKVIPA 768
           H +  H      ++LADGS+V C ++   D+F A   S G LG +    I V+PA
Sbjct: 140 HQVLPHYIKSMRIMLADGSIVTCSRELQKDMFAAAQVSLGALGVIVDITISVVPA 194


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -2

Query: 541 TLEQRAAPSLAAPMCGTADPSSLEARNGLSYSLCPPPR 428
           T     AP+ A+P+  T  PS+    NG S S    PR
Sbjct: 392 TSNPSTAPASASPLASTLKPSTANDTNGSSSSSSSNPR 429


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
 Frame = -1

Query: 602 TCDVVSTPVPITRPPTVSWSNSGTTGSAKPS-GANVRDS*PIVTRGSQRT----VIFSLS 438
           T    ST    T PP  S S++GT+ S  PS   +   S  I   G+  T     +   S
Sbjct: 304 TVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTS 363

Query: 437 TSKTST 420
           TS TST
Sbjct: 364 TSSTST 369



 Score = 26.2 bits (55), Expect = 5.2
 Identities = 22/81 (27%), Positives = 31/81 (38%)
 Frame = -1

Query: 662 TEPSARTSSYSRHTC*KSPWTCDVVSTPVPITRPPTVSWSNSGTTGSAKPSGANVRDS*P 483
           T P   TSS S      S  + D  S P+P T     + ++   TG +      +  + P
Sbjct: 137 TVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTSCTTSTSIPPTGGSSSLSTPITPTVP 196

Query: 482 IVTRGSQRTVIFSLSTSKTST 420
             +  S    I   STS T T
Sbjct: 197 PTSTSSTSIPIPPTSTSSTDT 217



 Score = 25.8 bits (54), Expect = 6.9
 Identities = 24/81 (29%), Positives = 33/81 (40%)
 Frame = -1

Query: 662 TEPSARTSSYSRHTC*KSPWTCDVVSTPVPITRPPTVSWSNSGTTGSAKPSGANVRDS*P 483
           T P   TSS S      S  + D  S+P+P T   + + S S  TG +      +  + P
Sbjct: 194 TVPPTSTSSTSIPIPPTSTSSTDTNSSPLP-TTSTSCTTSTSIPTGGSSSLSTPITPTVP 252

Query: 482 IVTRGSQRTVIFSLSTSKTST 420
             +  S    I   STS T T
Sbjct: 253 PTSTSSTSIPIPPTSTSSTDT 273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,980,092
Number of Sequences: 5004
Number of extensions: 57530
Number of successful extensions: 177
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)