Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_D16
(719 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 218 8e-58
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 218 8e-58
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 158 9e-40
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 87 2e-18
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 77 2e-15
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 77 2e-15
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 72 7e-14
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 41 2e-04
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 33 0.054
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 33 0.054
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 33 0.054
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 30 0.38
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi... 29 0.67
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 28 1.2
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 28 1.5
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 28 1.5
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 27 2.7
SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting endonucl... 26 6.2
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 25 8.2
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 25 8.2
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 218 bits (532), Expect = 8e-58
Identities = 114/203 (56%), Positives = 142/203 (69%), Gaps = 1/203 (0%)
Frame = +2
Query: 113 LRGXXDKQRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCI 292
+R K N+RNMSVIAHVDHGKSTLTDSLV KAGII+ A+AG+ RF DTR DEQ+R +
Sbjct: 9 VRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGV 68
Query: 293 TIKSTAISMFFELEEKDLVFITNPDQREKSE-KGFLINLIDSPGHVDFSSEVTAALRVTD 469
TIKSTAIS+F E+ + D+ D +E ++ FL+NLIDSPGHVDFSSEVTAALRVTD
Sbjct: 69 TIKSTAISLFAEMTDDDM-----KDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVTD 123
Query: 470 GALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVX 649
GAL QTETVLRQA+ ERI+P++ +NK+DR YQ F R+V
Sbjct: 124 GALVVVDTIEGVCVQTETVLRQALGERIRPVVVVNKVDRALLELQISQEELYQNFARVVE 183
Query: 650 NVNVIIATYNDDGGPMGEVRVXP 718
+VNV+I+TY D +G+ +V P
Sbjct: 184 SVNVVISTYYDK--VLGDCQVFP 204
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 218 bits (532), Expect = 8e-58
Identities = 114/203 (56%), Positives = 142/203 (69%), Gaps = 1/203 (0%)
Frame = +2
Query: 113 LRGXXDKQRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCI 292
+R K N+RNMSVIAHVDHGKSTLTDSLV KAGII+ A+AG+ RF DTR DEQ+R +
Sbjct: 9 VRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGV 68
Query: 293 TIKSTAISMFFELEEKDLVFITNPDQREKSE-KGFLINLIDSPGHVDFSSEVTAALRVTD 469
TIKSTAIS+F E+ + D+ D +E ++ FL+NLIDSPGHVDFSSEVTAALRVTD
Sbjct: 69 TIKSTAISLFAEMTDDDM-----KDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVTD 123
Query: 470 GALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVX 649
GAL QTETVLRQA+ ERI+P++ +NK+DR YQ F R+V
Sbjct: 124 GALVVVDTIEGVCVQTETVLRQALGERIRPVVVVNKVDRALLELQISQEELYQNFARVVE 183
Query: 650 NVNVIIATYNDDGGPMGEVRVXP 718
+VNV+I+TY D +G+ +V P
Sbjct: 184 SVNVVISTYYDK--VLGDCQVFP 204
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 158 bits (383), Expect = 9e-40
Identities = 88/181 (48%), Positives = 115/181 (63%)
Frame = +2
Query: 134 QRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAI 313
Q NIRN +++AHVDHGK+TL DSL++ GII+ AG RF D R+DE R IT+KS+AI
Sbjct: 16 QENIRNFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITRGITMKSSAI 75
Query: 314 SMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXX 493
S+FF++ I+ D++ + EK +LINLIDSPGHVDFSSEV++A R+ DGA
Sbjct: 76 SLFFKV-------ISQNDEK-RVEKDYLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDA 127
Query: 494 XXXXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVXNVNVIIAT 673
QT TVLRQA +RIK IL +NKMDR + R+V VN +I T
Sbjct: 128 VEGVCSQTITVLRQAWIDRIKVILVINKMDRLITELKLSPIEAHYHLLRLVEQVNAVIGT 187
Query: 674 Y 676
+
Sbjct: 188 F 188
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 87.4 bits (207), Expect = 2e-18
Identities = 59/160 (36%), Positives = 84/160 (52%), Gaps = 7/160 (4%)
Frame = +2
Query: 128 DKQR--NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARA--GETRF---TDTRKDEQDR 286
DK+R IRN+ + AH+D GK+T T+ ++ G I G+ D + E+++
Sbjct: 52 DKKRLKQIRNIGISAHIDSGKTTFTERVLYYTGRIKDIHEVRGKDNVGAKMDFMELEREK 111
Query: 287 CITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVT 466
ITI+S A +E + N Q+ EK + IN+ID+PGH+DF+ EV ALRV
Sbjct: 112 GITIQSAATHCTWERTVDQIE--ANEKQKTDFEKSYNINIIDTPGHIDFTIEVERALRVL 169
Query: 467 DGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDR 586
DGA+ QT TV RQ + I F+NKMDR
Sbjct: 170 DGAVLVLCAVSGVQSQTITVDRQMRRYNVPRISFVNKMDR 209
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 77.4 bits (182), Expect = 2e-15
Identities = 51/167 (30%), Positives = 78/167 (46%)
Frame = +2
Query: 134 QRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAI 313
Q +RN +VIAH+DHGKSTL+D ++ G+I +F D + E+ R IT+K+
Sbjct: 55 QNRVRNWAVIAHIDHGKSTLSDCILKLTGVI-NEHNFRNQFLDKLEVERRRGITVKAQTC 113
Query: 314 SMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXX 493
SM + + +L+NLID+PGHVDF +EV +L +G +
Sbjct: 114 SMIYYYH----------------GQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDA 157
Query: 494 XXXXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTF 634
QT + A ++ + I +NK+D QTF
Sbjct: 158 SQGIQAQTLSNFYMAFSQNLVIIPVLNKVDLPTADVDRTLIQVQQTF 204
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 77.4 bits (182), Expect = 2e-15
Identities = 55/151 (36%), Positives = 78/151 (51%), Gaps = 2/151 (1%)
Frame = +2
Query: 140 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFT--DTRKDEQDRCITIKSTAI 313
+IRN+ +IAH+D GK+TLT+ ++ G + +T T D E+ R ITI S AI
Sbjct: 27 SIRNVGIIAHIDAGKTTLTEKMLYYGGFTSHFGNVDTGDTVMDYLPAERQRGITINSAAI 86
Query: 314 SMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXX 493
S + +QR INLID+PGH DF+ EV ++ V DGA+
Sbjct: 87 SFTWR------------NQR--------INLIDTPGHADFTFEVERSVAVLDGAVAIIDG 126
Query: 494 XXXXXXQTETVLRQAIAERIKPILFMNKMDR 586
QT+ V +QA I ++F+NKMDR
Sbjct: 127 SAGVEAQTKVVWKQATKRGIPKVIFVNKMDR 157
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 72.1 bits (169), Expect = 7e-14
Identities = 50/183 (27%), Positives = 81/183 (44%), Gaps = 1/183 (0%)
Frame = +2
Query: 140 NIRNMSVIAHVDHGKSTLTDSLVSKAGI-IAGARAGETRFTDTRKDEQDRCITIKSTAIS 316
++R+ V H+ HGKS L D LV + R+TDT E++R ++IKST ++
Sbjct: 139 DVRSFIVAGHLHHGKSALLDLLVYYTHPDTKPPKRRSLRYTDTHYLERERVMSIKSTPLT 198
Query: 317 MFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXX 496
+ D + K+ F ID+PGHVDF EV A + ++DG +
Sbjct: 199 LAVS------------DMKGKT---FAFQCIDTPGHVDFVDEVAAPMAISDGVVLVVDVI 243
Query: 497 XXXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVXNVNVIIATY 676
T +++ AI + +L +NK+DR Y + ++ VN I
Sbjct: 244 EGVMINTTRIIKHAILHDMPIVLVLNKVDRLILELRLPPNDAYHKLRHVIDEVNDNICQI 303
Query: 677 NDD 685
+ D
Sbjct: 304 SKD 306
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 40.7 bits (91), Expect = 2e-04
Identities = 37/146 (25%), Positives = 57/146 (39%), Gaps = 1/146 (0%)
Frame = +2
Query: 149 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 328
N+ I HVDHGK+TLT ++ + A + D +E+ R ITI S + +E
Sbjct: 55 NIGTIGHVDHGKTTLTAAITKCLSDLGQASFMDYSQIDKAPEEKARGITISSAHVE--YE 112
Query: 329 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXX 508
+ +D PGH D+ + DGA+
Sbjct: 113 TANRHYAH------------------VDCPGHADYIKNMITGAATMDGAIIVVSATDGQM 154
Query: 509 XQTETVLRQAIAERIKPI-LFMNKMD 583
QT L A +K I +++NK+D
Sbjct: 155 PQTREHLLLARQVGVKQIVVYINKVD 180
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 32.7 bits (71), Expect = 0.054
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +2
Query: 131 KQRNIRNMSVIAHVDHGKSTLTDSLVSKAG 220
K++ N+ VI HVD GKST T L+ K G
Sbjct: 3 KEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 32.7 bits (71), Expect = 0.054
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +2
Query: 131 KQRNIRNMSVIAHVDHGKSTLTDSLVSKAG 220
K++ N+ VI HVD GKST T L+ K G
Sbjct: 3 KEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 32.7 bits (71), Expect = 0.054
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +2
Query: 131 KQRNIRNMSVIAHVDHGKSTLTDSLVSKAG 220
K++ N+ VI HVD GKST T L+ K G
Sbjct: 3 KEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 29.9 bits (64), Expect = 0.38
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = +2
Query: 152 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR----FTDTRKDEQDRCITIKSTAISM 319
++++ HVDHGK+TL D+ K+ I + G T+ FT D+ + IT T M
Sbjct: 174 VTLMGHVDHGKTTLLDAF-RKSTIASTEHGGITQKIGAFT-VPFDKGSKFITFLDTPGHM 231
Query: 320 FFELEEK 340
FE K
Sbjct: 232 AFEAMRK 238
>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 29.1 bits (62), Expect = 0.67
Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Frame = +2
Query: 92 CISRYPRLRGXXDKQR-NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 268
CI + ++R D+ R I + K+ +T L S+ ++A A R+ D +
Sbjct: 434 CIDEFDKMR---DEDRVAIHEAMEQQTISIAKAGITTILNSRTSVLAAANPIFGRYDDMK 490
Query: 269 KDEQDRCITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVT 448
++ I +ST +S F D++FI + E ++ ++I+ ++ SSE
Sbjct: 491 TPGEN--IDFQSTILSRF------DMIFIVKDEHDETKDRNIARHVINLHTNLQESSETL 542
Query: 449 A 451
A
Sbjct: 543 A 543
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 28.3 bits (60), Expect = 1.2
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 1/111 (0%)
Frame = +2
Query: 149 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 328
N+ I HVD GKSTL +++ G++ R E + E + S A+ E
Sbjct: 240 NIVFIGHVDAGKSTLGGNILFLTGMV-DKRTMEK--IEREAKEAGKESWYLSWALDSTSE 296
Query: 329 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDF-SSEVTAALRVTDGAL 478
EK E + F +L+D+PGH + ++ + A + G L
Sbjct: 297 EREKGKTVEVGRAYFETEHRRF--SLLDAPGHKGYVTNMINGASQADIGVL 345
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 27.9 bits (59), Expect = 1.5
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = -3
Query: 525 TVSVCTHTPD-TQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMN 349
T + C+ P+ T ST + +V+ S + ++ ST P ++ + S S V +
Sbjct: 575 TTTTCSSRPEETISTVSTTSTVSESGSSSASITSTYPSSTLSMTTSHLS-----SSSVHS 629
Query: 348 TKSFSSSSKNIEMAV 304
+ + SSSS++ M++
Sbjct: 630 SSAHSSSSRSSSMSL 644
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.9 bits (59), Expect = 1.5
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = -3
Query: 528 STVSVCTHTPDTQSTT-TRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVM 352
+T S + +P + STT T +PS + S++ +S S+ S S S S
Sbjct: 135 TTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 194
Query: 351 NTKSFSSSSKNIEMAV 304
++ S SSSS + + +
Sbjct: 195 SSSSSSSSSSSSSVPI 210
Score = 27.1 bits (57), Expect = 2.7
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = -3
Query: 531 RSTVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVM 352
++TVS + + T S+++ +PS + + TS S+ S S S S
Sbjct: 124 QTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSS 183
Query: 351 NTKSFSSSSKN 319
++ S SSSS +
Sbjct: 184 SSSSSSSSSSS 194
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 27.1 bits (57), Expect = 2.7
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = -3
Query: 438 EEKSTCPGESIKLIKKPFSLFSRWSGFVMNTKSFSS-SSKNIEMAVDLMVMQRSCSSLRV 262
EE + P + K KK S F+ T +S S++NI+ A+DL+ + S S ++
Sbjct: 66 EEMESLPSKGGKGSKKAAKKNSSLDAFLNETPQTASYSARNIDDALDLLSLNNSSSKDKI 125
>SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting
endonuclease Cce1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 258
Score = 25.8 bits (54), Expect = 6.2
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -3
Query: 390 PFSLFSRWSGFVMNTK-SFSSSSKNIEMAVDLMVMQR 283
P S +S W+ V+NTK SFS ++M +L+ Q+
Sbjct: 168 PKSTYSYWAS-VLNTKASFSKKKSRVQMVKELIDGQK 203
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 25.4 bits (53), Expect = 8.2
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = -3
Query: 528 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMN 349
S+ S T TP + STT+ + S + S ++S S+ + + S S S +
Sbjct: 140 SSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSS-SASSSGSISSAD 198
Query: 348 TKSFSSSSKN 319
K+ S+SS +
Sbjct: 199 AKTVSASSNS 208
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 25.4 bits (53), Expect = 8.2
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 174 ITASQPSRTRWFPR-PVSLLVREPERPVSLTRVRTNK 281
+T S T + P P S + REP P+S R+R+++
Sbjct: 48 LTPEPSSNTFYAPSSPASAVRREPLSPMSFVRMRSHR 84
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,925,122
Number of Sequences: 5004
Number of extensions: 57541
Number of successful extensions: 207
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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