Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_D16
(719 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 290 6e-79
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 287 4e-78
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 118 4e-27
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 118 4e-27
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 92 4e-19
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 92 4e-19
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 79 3e-15
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 79 3e-15
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 72 5e-13
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 44 1e-04
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 44 1e-04
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 44 1e-04
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 39 0.003
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 39 0.003
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 36 0.038
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 36 0.038
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 34 0.12
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 34 0.12
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 34 0.12
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 34 0.12
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 33 0.16
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 32 0.36
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 32 0.36
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 31 0.63
AL117193-12|CAB60305.1| 415|Caenorhabditis elegans Hypothetical... 31 0.63
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 31 1.1
U41992-4|AAL02506.2| 876|Caenorhabditis elegans Hypothetical pr... 31 1.1
U41104-4|AAK67239.1| 388|Caenorhabditis elegans Nuclear hormone... 30 1.9
AL031627-6|CAA20958.1| 338|Caenorhabditis elegans Hypothetical ... 30 1.9
AL009246-7|CAA15840.2| 347|Caenorhabditis elegans Hypothetical ... 30 1.9
AF083231-1|AAD03689.1| 388|Caenorhabditis elegans nuclear recep... 30 1.9
AF000264-4|AAC71125.3| 631|Caenorhabditis elegans Hypothetical ... 30 1.9
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 29 2.5
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 29 2.5
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z74472-5|CAA98943.1| 802|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z69792-3|CAA93666.1| 284|Caenorhabditis elegans Hypothetical pr... 29 4.4
U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical pr... 29 4.4
U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z81143-5|CAB03518.2| 370|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 28 7.7
AF040652-7|AAB95017.1| 210|Caenorhabditis elegans Hypothetical ... 28 7.7
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 290 bits (712), Expect = 6e-79
Identities = 150/210 (71%), Positives = 164/210 (78%), Gaps = 8/210 (3%)
Frame = +2
Query: 113 LRGXXDKQRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCI 292
+R D++RNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG++AGETRFTDTRKDEQ+RCI
Sbjct: 9 IRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCI 68
Query: 293 TIKSTAISMFFELEEKDLVFITNPDQRE------KSEK--GFLINLIDSPGHVDFSSEVT 448
TIKSTAIS+FFELE+KDL F+ +Q E K EK GFLINLIDSPGHVDFSSEVT
Sbjct: 69 TIKSTAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVT 128
Query: 449 AALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQ 628
AALRVTDGAL QTETVLRQAIAERIKP+LFMNKMDR +Q
Sbjct: 129 AALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLGAEELFQ 188
Query: 629 TFQRIVXNVNVIIATYNDDGGPMGEVRVXP 718
TFQRIV N+NVIIATY DD GPMG + V P
Sbjct: 189 TFQRIVENINVIIATYGDDDGPMGPIMVDP 218
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 287 bits (705), Expect = 4e-78
Identities = 149/210 (70%), Positives = 163/210 (77%), Gaps = 8/210 (3%)
Frame = +2
Query: 113 LRGXXDKQRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCI 292
+R D++RNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG++AGETRFTDTRKDEQ+RCI
Sbjct: 9 IRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCI 68
Query: 293 TIKSTAISMFFELEEKDLVFITNPDQRE------KSEK--GFLINLIDSPGHVDFSSEVT 448
TIKSTAIS+FFELE+KDL F+ +Q E K EK GFLINLIDSPGHVDFSSEVT
Sbjct: 69 TIKSTAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVT 128
Query: 449 AALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQ 628
AAL VTDGAL QTETVLRQAIAERIKP+LFMNKMDR +Q
Sbjct: 129 AALGVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLGAEELFQ 188
Query: 629 TFQRIVXNVNVIIATYNDDGGPMGEVRVXP 718
TFQRIV N+NVIIATY DD GPMG + V P
Sbjct: 189 TFQRIVENINVIIATYGDDDGPMGPIMVDP 218
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 118 bits (284), Expect = 4e-27
Identities = 72/177 (40%), Positives = 97/177 (54%)
Frame = +2
Query: 140 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISM 319
+IRN+ ++AHVDHGK++ DSLVS +I+ AG+ R+ D+R+DEQ R IT+KS+ IS+
Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVSANAVISSRMAGKLRYMDSREDEQTRGITMKSSGISL 78
Query: 320 FFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXX 499
E LINLIDSPGHVDFS EVT+AL ++D AL
Sbjct: 79 LCE--------------------PLLINLIDSPGHVDFSGEVTSALILSDIALLLIDVIE 118
Query: 500 XXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVXNVNVIIA 670
QTE ++RQ I IL +NK+DR YQ R++ VN I+
Sbjct: 119 GICSQTEALIRQVIRNGQAMILVINKIDRLRVELKMSSSEAYQHMSRLIEGVNSCIS 175
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 118 bits (284), Expect = 4e-27
Identities = 72/177 (40%), Positives = 97/177 (54%)
Frame = +2
Query: 140 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISM 319
+IRN+ ++AHVDHGK++ DSLVS +I+ AG+ R+ D+R+DEQ R IT+KS+ IS+
Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVSANAVISSRMAGKLRYMDSREDEQTRGITMKSSGISL 78
Query: 320 FFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXX 499
E LINLIDSPGHVDFS EVT+AL ++D AL
Sbjct: 79 LCE--------------------PLLINLIDSPGHVDFSGEVTSALILSDIALLLIDVIE 118
Query: 500 XXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVXNVNVIIA 670
QTE ++RQ I IL +NK+DR YQ R++ VN I+
Sbjct: 119 GICSQTEALIRQVIRNGQAMILVINKIDRLRVELKMSSSEAYQHMSRLIEGVNSCIS 175
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 91.9 bits (218), Expect = 4e-19
Identities = 59/186 (31%), Positives = 93/186 (50%), Gaps = 1/186 (0%)
Frame = +2
Query: 143 IRNMSVIAHVDHGKSTLTDSLVSKAGI-IAGARAGETRFTDTRKDEQDRCITIKSTAISM 319
+RN+++ H+ HGK+T D L+ + A + RFTD E+ R +IKS +S
Sbjct: 132 MRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRGCSIKSQPVS- 190
Query: 320 FFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXX 499
I D R KS +L+N+ID+PGHV+FS E+TA+ R+ DG +
Sbjct: 191 -----------IVAQDSRSKS---YLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHE 236
Query: 500 XXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVXNVNVIIATYN 679
TE +R AI ER+ L ++K+DR Y + I+ VN I++T+
Sbjct: 237 GVMMNTERAIRHAIQERLAVTLCISKIDRLLLELKLPPADAYFKLRLIIDQVNNILSTFA 296
Query: 680 DDGGPM 697
++ P+
Sbjct: 297 EEDVPV 302
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 91.9 bits (218), Expect = 4e-19
Identities = 59/186 (31%), Positives = 93/186 (50%), Gaps = 1/186 (0%)
Frame = +2
Query: 143 IRNMSVIAHVDHGKSTLTDSLVSKAGI-IAGARAGETRFTDTRKDEQDRCITIKSTAISM 319
+RN+++ H+ HGK+T D L+ + A + RFTD E+ R +IKS +S
Sbjct: 7 MRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRGCSIKSQPVS- 65
Query: 320 FFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXX 499
I D R KS +L+N+ID+PGHV+FS E+TA+ R+ DG +
Sbjct: 66 -----------IVAQDSRSKS---YLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHE 111
Query: 500 XXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVXNVNVIIATYN 679
TE +R AI ER+ L ++K+DR Y + I+ VN I++T+
Sbjct: 112 GVMMNTERAIRHAIQERLAVTLCISKIDRLLLELKLPPADAYFKLRLIIDQVNNILSTFA 171
Query: 680 DDGGPM 697
++ P+
Sbjct: 172 EEDVPV 177
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 79.0 bits (186), Expect = 3e-15
Identities = 51/147 (34%), Positives = 75/147 (51%)
Frame = +2
Query: 143 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMF 322
IRN ++AHVDHGKSTL D L+ G + G+ + D + E++R IT+K+ ++
Sbjct: 42 IRNFGIVAHVDHGKSTLADRLLEMCGAVP---PGQKQMLDKLQVERERGITVKAQTAAL- 97
Query: 323 FELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXX 502
+G+L+NLID+PGHVDFS+EV+ +L V DG L
Sbjct: 98 -------------------RHRGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG 138
Query: 503 XXXQTETVLRQAIAERIKPILFMNKMD 583
QT A + I+ I +NK+D
Sbjct: 139 VQAQTIANFWLAFEKNIQIIPVINKID 165
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 79.0 bits (186), Expect = 3e-15
Identities = 56/150 (37%), Positives = 78/150 (52%), Gaps = 2/150 (1%)
Frame = +2
Query: 143 IRNMSVIAHVDHGKSTLTDSLVSKAGII--AGARAGETRFTDTRKDEQDRCITIKSTAIS 316
+RN+ VIAHVD GK+T+T+ L+ AG I AG TD E++R IT++S A++
Sbjct: 25 LRNIGVIAHVDAGKTTVTERLLYLAGAIHVAGHVDKGNTVTDFLDIERERGITVQSAAVN 84
Query: 317 MFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXX 496
+ + KG INLID+PGHVDF EV +RV DG +
Sbjct: 85 LDW--------------------KGHRINLIDTPGHVDFRVEVERCVRVLDGIVVVIDGS 124
Query: 497 XXXXXQTETVLRQAIAERIKPILFMNKMDR 586
QT TV RQ+ ++ F+NKMD+
Sbjct: 125 AGVQPQTLTVWRQSSKFKLPAHFFINKMDK 154
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 71.7 bits (168), Expect = 5e-13
Identities = 54/148 (36%), Positives = 72/148 (48%)
Frame = +2
Query: 143 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMF 322
IRN+ + AH+D GK+T+T+ ++ AG I E R D D F
Sbjct: 44 IRNIGISAHIDSGKTTVTERILYYAGRIDSMH--EVRGKDDVGATMD------------F 89
Query: 323 FELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXX 502
+LE + + I + G IN+ID+PGHVDF+ EV ALRV DGA+
Sbjct: 90 MDLERQRGITIQSA-ATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLVLCGVGG 148
Query: 503 XXXQTETVLRQAIAERIKPILFMNKMDR 586
QT TV RQ + I F+NKMDR
Sbjct: 149 VQSQTFTVNRQLARYNVPFICFVNKMDR 176
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 43.6 bits (98), Expect = 1e-04
Identities = 41/148 (27%), Positives = 61/148 (41%), Gaps = 3/148 (2%)
Frame = +2
Query: 149 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 328
N+ I HVDHGK+TLT ++ GA+ + D +E+ R ITI + F
Sbjct: 51 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINA------FH 104
Query: 329 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXX 508
LE E +++ + ID PGH D+ + +GA+
Sbjct: 105 LE------------YETAKRHYA--HIDCPGHADYIKNMITGAAQMEGAILVVAATDGPM 150
Query: 509 XQTETVL---RQAIAERIKPILFMNKMD 583
QT L RQ ++FMNK+D
Sbjct: 151 PQTREHLLLARQVGVPLDNIVVFMNKVD 178
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 43.6 bits (98), Expect = 1e-04
Identities = 41/148 (27%), Positives = 61/148 (41%), Gaps = 3/148 (2%)
Frame = +2
Query: 149 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 328
N+ I HVDHGK+TLT ++ GA+ + D +E+ R ITI + F
Sbjct: 52 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINA------FH 105
Query: 329 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXX 508
LE E +++ + ID PGH D+ + +GA+
Sbjct: 106 LE------------YETAKRHYA--HIDCPGHADYIKNMITGAAQMEGAILVVAATDGPM 151
Query: 509 XQTETVL---RQAIAERIKPILFMNKMD 583
QT L RQ ++FMNK+D
Sbjct: 152 PQTREHLLLARQVGVPLDNIVVFMNKVD 179
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 43.6 bits (98), Expect = 1e-04
Identities = 41/148 (27%), Positives = 61/148 (41%), Gaps = 3/148 (2%)
Frame = +2
Query: 149 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 328
N+ I HVDHGK+TLT ++ GA+ + D +E+ R ITI + F
Sbjct: 52 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINA------FH 105
Query: 329 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXX 508
LE E +++ + ID PGH D+ + +GA+
Sbjct: 106 LE------------YETAKRHYA--HIDCPGHADYIKNMITGAAQMEGAILVVAATDGPM 151
Query: 509 XQTETVL---RQAIAERIKPILFMNKMD 583
QT L RQ ++FMNK+D
Sbjct: 152 PQTREHLLLARQVGVPLDNIVVFMNKVD 179
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 39.1 bits (87), Expect = 0.003
Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 1/115 (0%)
Frame = +2
Query: 137 RNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAIS 316
+++ N+ V+ HVD GKSTL L+ ++ ++R D K E R
Sbjct: 168 KDLINLIVVGHVDAGKSTLMGHLLHDLEVV------DSRTIDKFKHEAARNGKASFAYAW 221
Query: 317 MFFELEEKDLVFITNPDQREKSEKGF-LINLIDSPGHVDFSSEVTAALRVTDGAL 478
+ E EE+ +T R E I L+D+PGH DF S + D A+
Sbjct: 222 VLDETEEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAI 276
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 39.1 bits (87), Expect = 0.003
Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 1/115 (0%)
Frame = +2
Query: 137 RNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAIS 316
+++ N+ V+ HVD GKSTL L+ ++ ++R D K E R
Sbjct: 186 KDLINLIVVGHVDAGKSTLMGHLLHDLEVV------DSRTIDKFKHEAARNGKASFAYAW 239
Query: 317 MFFELEEKDLVFITNPDQREKSEKGF-LINLIDSPGHVDFSSEVTAALRVTDGAL 478
+ E EE+ +T R E I L+D+PGH DF S + D A+
Sbjct: 240 VLDETEEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAI 294
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 35.5 bits (78), Expect = 0.038
Identities = 33/110 (30%), Positives = 50/110 (45%)
Frame = +2
Query: 149 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 328
N+ I H+DHGK+TLT ++ A+ + D K+E+ R ITI I
Sbjct: 47 NVGTIGHIDHGKTTLTSAITRVQAKKGFAKHIKFDEIDKGKEEKKRGITINVAHIGY--- 103
Query: 329 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 478
E L ++ D S+ F+ N+I +D + V AA TDG +
Sbjct: 104 --ESPLRRYSHTDCPGHSD--FIKNMICGTSQMDVAVLVIAA---TDGVM 146
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 35.5 bits (78), Expect = 0.038
Identities = 33/110 (30%), Positives = 50/110 (45%)
Frame = +2
Query: 149 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 328
N+ I H+DHGK+TLT ++ A+ + D K+E+ R ITI I
Sbjct: 47 NVGTIGHIDHGKTTLTSAITRVQAKKGFAKHIKFDEIDKGKEEKKRGITINVAHIGY--- 103
Query: 329 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 478
E L ++ D S+ F+ N+I +D + V AA TDG +
Sbjct: 104 --ESPLRRYSHTDCPGHSD--FIKNMICGTSQMDVAVLVIAA---TDGVM 146
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 33.9 bits (74), Expect = 0.12
Identities = 33/110 (30%), Positives = 51/110 (46%)
Frame = +2
Query: 149 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 328
N+ VI HVD GKST T L+ K G I R E +F + E + + K + +
Sbjct: 9 NIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIE-KF-EKEAQEMGKG-SFKYAWVLDKLK 64
Query: 329 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 478
E + + I + ++ K + I +ID+PGH DF + D A+
Sbjct: 65 AERERGITIDIALWKFETAK-YYITIIDAPGHRDFIKNMITGTSQADCAV 113
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 33.9 bits (74), Expect = 0.12
Identities = 33/110 (30%), Positives = 51/110 (46%)
Frame = +2
Query: 149 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 328
N+ VI HVD GKST T L+ K G I R E +F + E + + K + +
Sbjct: 9 NIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIE-KF-EKEAQEMGKG-SFKYAWVLDKLK 64
Query: 329 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 478
E + + I + ++ K + I +ID+PGH DF + D A+
Sbjct: 65 AERERGITIDIALWKFETAK-YYITIIDAPGHRDFIKNMITGTSQADCAV 113
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 33.9 bits (74), Expect = 0.12
Identities = 33/110 (30%), Positives = 51/110 (46%)
Frame = +2
Query: 149 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 328
N+ VI HVD GKST T L+ K G I R E +F + E + + K + +
Sbjct: 9 NIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIE-KF-EKEAQEMGKG-SFKYAWVLDKLK 64
Query: 329 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 478
E + + I + ++ K + I +ID+PGH DF + D A+
Sbjct: 65 AERERGITIDIALWKFETAK-YYITIIDAPGHRDFIKNMITGTSQADCAV 113
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 33.9 bits (74), Expect = 0.12
Identities = 33/110 (30%), Positives = 51/110 (46%)
Frame = +2
Query: 149 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 328
N+ VI HVD GKST T L+ K G I R E +F + E + + K + +
Sbjct: 9 NIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIE-KF-EKEAQEMGKG-SFKYAWVLDKLK 64
Query: 329 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 478
E + + I + ++ K + I +ID+PGH DF + D A+
Sbjct: 65 AERERGITIDIALWKFETAK-YYITIIDAPGHRDFIKNMITGTSQADCAV 113
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 33.5 bits (73), Expect = 0.16
Identities = 22/66 (33%), Positives = 32/66 (48%)
Frame = +2
Query: 389 GFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPILF 568
GFLI ID+PGH FS+ T + D A+ QT L+ I + ++
Sbjct: 550 GFLI--IDTPGHESFSNLRTRGSSLCDFAILVVDIMHGLEPQTIESLKLLIKGKTPFVIA 607
Query: 569 MNKMDR 586
+NK+DR
Sbjct: 608 LNKIDR 613
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 32.3 bits (70), Expect = 0.36
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +2
Query: 104 YPRLRGXX-DKQRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 253
+P+L D +R ++++ HVDHGK+TL D++ + I AG G T+
Sbjct: 142 HPQLEASPKDLERRPPIVTIMGHVDHGKTTLLDAM-RNSQIAAGEFGGITQ 191
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/67 (22%), Positives = 30/67 (44%)
Frame = +2
Query: 386 KGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPIL 565
KG + +D+PGH F+S + D + QT ++ A ++ ++
Sbjct: 202 KGRRVTFLDTPGHAAFASMRARGAKGADIVVLVVAADDGVKEQTAQSIKFAKDANVQLVV 261
Query: 566 FMNKMDR 586
+NK+D+
Sbjct: 262 AVNKIDK 268
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 6 protein.
Length = 1254
Score = 32.3 bits (70), Expect = 0.36
Identities = 18/68 (26%), Positives = 29/68 (42%)
Frame = -3
Query: 546 SAIA*RSTVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRW 367
+AI ++ + T +T STT+ P +T + + +E T S+ P L RW
Sbjct: 691 TAIFAEASTGIITTDEETTSTTSTTPEITSTKEIVTESAITQTSVSVVESSTPRQLPERW 750
Query: 366 SGFVMNTK 343
V K
Sbjct: 751 KAIVNKFK 758
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 31.5 bits (68), Expect = 0.63
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +2
Query: 149 NMSVIAHVDHGKSTLTDSLVSKAG 220
N+ VI HVD GKST T L+ K G
Sbjct: 9 NIVVIGHVDSGKSTTTGHLIYKCG 32
>AL117193-12|CAB60305.1| 415|Caenorhabditis elegans Hypothetical
protein Y105C5A.23 protein.
Length = 415
Score = 31.5 bits (68), Expect = 0.63
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Frame = +3
Query: 108 RVSVGXWTSSGISATCL*SPTSIT-ASQPSRTRWFPRPVSLLVREPERPVSLTRVRTNKT 284
R S+ +S C T +T AS+ + + F R V+ ++EPE+P++ R+ +
Sbjct: 246 RPSIRHTSSFSFHTGCDTVDTVLTRASEWNPLKTFSRHVN--IKEPEKPMTTPRIVVSDE 303
Query: 285 VASPLNLRPSLCSSSLKRKI*YSSQTLTS 371
PL RPS+ S + T TS
Sbjct: 304 TEVPLTQRPSISPSEASAVMRTGVHTSTS 332
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -3
Query: 528 STVSVCTHTPDTQSTTTRAPSVTRS-AAVTSEEKSTCPGESIKLIKKP 388
+T + T T T +TTT P+ T + A TSE +T P + + KP
Sbjct: 222 TTPTTTTTTTTTPTTTTTTPTTTTTPATTTSETTTTTPTTTTQTTTKP 269
>U41992-4|AAL02506.2| 876|Caenorhabditis elegans Hypothetical
protein F32E10.3 protein.
Length = 876
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -3
Query: 528 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKK 391
+T + T + +TTT APS T + VT K P E KL+KK
Sbjct: 764 TTAAPSTKPAEETTTTTEAPSTT-TKPVTVAVKKVSPEEMEKLVKK 808
>U41104-4|AAK67239.1| 388|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 16 protein.
Length = 388
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -3
Query: 357 VMNTKSFSSSSKN-IEMAVDLMVMQRSCSSLRVSVKRVSPALAPAMIPALETNESVRVDL 181
V N K++S N ++ +++ M R+C ++ ++PA +P +T V +DL
Sbjct: 42 VSNRKTYSCQGNNDCDVTINIRCMCRACRYIKCIEVGMNPAGVQQRLPPSKTLVEVSMDL 101
Query: 180 P 178
P
Sbjct: 102 P 102
>AL031627-6|CAA20958.1| 338|Caenorhabditis elegans Hypothetical
protein Y102A5C.15 protein.
Length = 338
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = -3
Query: 411 SIKLIKKPFSLFSRWSGFVMNTKSFSSSSKNIEMAVDLMVMQ 286
S+ L+ PF L +R +G+ + FSS S + MAV ++ +Q
Sbjct: 68 SVTLLGIPFILATRLAGYSLGLLKFSSYSFLVTMAVSVLSLQ 109
>AL009246-7|CAA15840.2| 347|Caenorhabditis elegans Hypothetical
protein C47F8.8 protein.
Length = 347
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 505 HTRHTVNNHKGSISDTECSCYFRREINV 422
H T H G IS T C+ +FRR I +
Sbjct: 15 HNTETTRRHFGIISCTACAAFFRRSIGM 42
>AF083231-1|AAD03689.1| 388|Caenorhabditis elegans nuclear receptor
NHR-16 protein.
Length = 388
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -3
Query: 357 VMNTKSFSSSSKN-IEMAVDLMVMQRSCSSLRVSVKRVSPALAPAMIPALETNESVRVDL 181
V N K++S N ++ +++ M R+C ++ ++PA +P +T V +DL
Sbjct: 42 VSNRKTYSCQGNNDCDVTINIRCMCRACRYIKCIEVGMNPAGVQQRLPPSKTLVEVSMDL 101
Query: 180 P 178
P
Sbjct: 102 P 102
>AF000264-4|AAC71125.3| 631|Caenorhabditis elegans Hypothetical
protein F43E2.3 protein.
Length = 631
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 498 DTQSTTTRAPSVTRSAAVTSEEKSTCPGESIK 403
D+ +T R+P TRS ++TS + C G+ I+
Sbjct: 174 DSANTILRSPYSTRSDSITSVDSGQCSGDQIE 205
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -1
Query: 176 DRRGRSQTCCGYSAACPXXHGDADTVK 96
DRRGR TC G CP G + K
Sbjct: 61 DRRGRCMTCAGNLTDCPGHFGHLELAK 87
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein (
C.elegans RNA polymeraseII largest subunit (ama-1 IV)
gene, complete cds. ).
Length = 1859
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -1
Query: 176 DRRGRSQTCCGYSAACPXXHGDADTVK 96
DRRGR TC G CP G + K
Sbjct: 61 DRRGRCMTCAGNLTDCPGHFGHLELAK 87
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 29.1 bits (62), Expect = 3.3
Identities = 29/110 (26%), Positives = 44/110 (40%)
Frame = +2
Query: 149 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 328
NM + HVD GKST+ L+ G++ R E + + E+ R S + E
Sbjct: 111 NMVFVGHVDAGKSTIGGQLMFLTGMV-DKRTLEKYEREAK--EKGRESWYLSWCMDTNDE 167
Query: 329 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 478
EK E ++ F I +D+PGH F + D A+
Sbjct: 168 EREKGKTVEVGRAYFETEKRHFTI--LDAPGHKSFVPNMIVGANQADLAV 215
>Z74472-5|CAA98943.1| 802|Caenorhabditis elegans Hypothetical
protein F23H12.5 protein.
Length = 802
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 528 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCP 418
ST + T T T +TTT AP+ T + T+E P
Sbjct: 210 STSTTTTTTTSTTTTTTEAPTTTTTIKTTTESIEPIP 246
>Z69792-3|CAA93666.1| 284|Caenorhabditis elegans Hypothetical
protein F40E10.5 protein.
Length = 284
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = -3
Query: 510 THTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESI---KLIKKPFSLF 376
T T T +TTT AP++ + + T+E+ +T +I + +K FS F
Sbjct: 218 TTTTTTTTTTTEAPTMPEAVSSTTEQSTTTTAAAIIAEETKEKEFSAF 265
>U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical protein
R08E3.1b protein.
Length = 1465
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -3
Query: 528 STVSVCTHTPDTQSTTTRAPSVTRSAAVTS 439
STVSV T T ST+T APS ++S V++
Sbjct: 1044 STVSVITSTTMLPSTSTVAPSTSQSTIVST 1073
>U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical protein
R08E3.1a protein.
Length = 1512
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -3
Query: 528 STVSVCTHTPDTQSTTTRAPSVTRSAAVTS 439
STVSV T T ST+T APS ++S V++
Sbjct: 1044 STVSVITSTTMLPSTSTVAPSTSQSTIVST 1073
>Z81143-5|CAB03518.2| 370|Caenorhabditis elegans Hypothetical
protein ZK265.7 protein.
Length = 370
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 531 RSTVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKST 424
++T + T T T +TTT P+ + A + +KST
Sbjct: 163 KTTTTTTTSTTSTSTTTTEKPTTATTTARVTPKKST 198
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
protein W01F3.3 protein.
Length = 2175
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -3
Query: 528 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKST 424
+T + + T + +TTT AP+ T S VT+ E +T
Sbjct: 235 TTTTTESPTTEASTTTTEAPTTTTSEEVTTTEITT 269
>AF040652-7|AAB95017.1| 210|Caenorhabditis elegans Hypothetical
protein T05A8.6 protein.
Length = 210
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -3
Query: 528 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKP 388
+T T T T TTT+AP T + A T+ + C S ++ P
Sbjct: 74 TTPGATTVTTTTAPTTTKAPDCTTTTAPTTTKAPDCTTCSQDILTDP 120
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,560,994
Number of Sequences: 27780
Number of extensions: 341109
Number of successful extensions: 1325
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 1201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1310
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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