Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_D15
         (805 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    24   1.6  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    23   2.8  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    22   6.6  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   8.7  

>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 98  IAVADMPRRPXNEMPRHLN 42
           +A    P RP N++PR LN
Sbjct: 277 VASRTWPARPVNQVPRDLN 295


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +3

Query: 534 LPTLSKIFEKIILEQLLNHFYSNNLLHNKQYGFTXGRSTIDAGVDLIKNIF 686
           + +LS++     L+     F+++  L    YG   G  T+  G + IKNI+
Sbjct: 76  ISSLSEVKMDFTLDFYFRQFWTDPRL---AYGKRPGVETLSVGSEFIKNIW 123


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 535 STEMGLKLVGSKVLPDLNRGIILL 464
           +T + LKL+ S +LPD+   + +L
Sbjct: 321 TTNLVLKLLTSPLLPDIKEQVEIL 344


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -1

Query: 511 VGSKVLPDLNRGIILLYFIRSGNTPL*IQSLNIVAR 404
           +GS+ +PDL   I +LY ++    PL  +   IVAR
Sbjct: 45  LGSQWIPDLGVPIGVLYCMKCECVPL-QKKRRIVAR 79


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,694
Number of Sequences: 336
Number of extensions: 3484
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21895259
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)