Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_D15
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    31   0.25 
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    28   1.4  
SPAP11E10.01 |||ornithine cyclodeaminase family |Schizosaccharom...    27   3.1  
SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces ...    26   7.2  
SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces...    26   7.2  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    25   9.5  
SPCC16C4.05 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    25   9.5  

>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 168 RYFADIPASTTKSLISSPTVAESLLQDHVDECSVNF 275
           +Y+   P+ +T+ L  S +VAES+     D CS NF
Sbjct: 537 KYWCPSPSLSTEDLFESFSVAESVTSTDEDICSTNF 572


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
 Frame = +3

Query: 405 LATIFNDCIYNGVFPDLMKYSKIIPLFKSGSTFDPTNFRPISVLPTLSKIFEKIILEQLL 584
           + T+ ND I + + PDL  Y     +F      +   + PI+VLP+LS++ +  I E + 
Sbjct: 331 ILTMPNDDITHPI-PDLTGYITEGQIFVDRQLHNNAIYPPINVLPSLSRLMKSAIGEGMT 389

Query: 585 NHFYSNNLLHNKQYG-FTXGR 644
            + + +  + N+ Y  +  GR
Sbjct: 390 RNDHGD--VSNQLYAMYAIGR 408


>SPAP11E10.01 |||ornithine cyclodeaminase family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 330

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +3

Query: 108 ILQINAKXITSHQ-AVASAFXRYFADIPASTTKSLISSPTVAESLLQDHVDECSV 269
           + Q++   +TS + A ASA    +     ST+  +I S  VAE L+  H   CSV
Sbjct: 103 LAQLDGNELTSRRTAAASALASSYLSKEDSTSLLIIGSGKVAEKLIHAH---CSV 154


>SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 290

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = +3

Query: 168 RYFADIPASTTKSLISSPTVAESLLQDHVDECSVNFKFTNIAIKDIIDNFKTINIKKTGD 347
           R FA+  +    SL   P V E LL+ H D+    F   N   K   ++F  +N+++   
Sbjct: 147 RSFAEQSSRDPSSLPKGPVVIEGLLRQHTDK--PRFMMKNEPEK---NSFYFLNVREFAQ 201

Query: 348 LWG 356
           L G
Sbjct: 202 LKG 204


>SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 183

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 492 GSTFDPTNFRPISVLPTLSKIFEKIILEQLLNHFYSNNL 608
           G    PTN +  S L +   +F+K I++QL N+   N L
Sbjct: 23  GRVGKPTNAKTGSALTSDKSLFDKRIVKQLKNNELFNRL 61


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +3

Query: 270 NFKFTNIAIKDIIDNFKTIN--IKKTGD 347
           NFK  +I +KD +D+FK  N  IK  GD
Sbjct: 843 NFK-PDITLKDYVDSFKPTNTVIKPLGD 869


>SPCC16C4.05 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +1

Query: 589 ISIPITCFITNNMDSLXVVRLLMQV*ILLKIFFRLGRNRIMPLGYSATYL 738
           ++ P   FI ++ DS+ V  +   V      F+   + R++PLG+SA  L
Sbjct: 76  VTQPAVVFILHDQDSMLVTHMPQLV--ANANFYGSSKCRLVPLGFSAQAL 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,016,081
Number of Sequences: 5004
Number of extensions: 58139
Number of successful extensions: 144
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)