Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_D15
         (805 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943...    48   7e-06
12_01_1092 - 11362094-11362367,11362739-11362795,11363256-113636...    30   2.5  
06_02_0178 + 12652654-12652877,12652964-12653140,12653141-126532...    28   10.0 
02_01_0091 + 646299-649082                                             28   10.0 

>06_02_0297 -
           13891954-13892556,13893019-13893855,13894179-13894394,
           13895455-13895874,13896198-13896506
          Length = 794

 Score = 48.4 bits (110), Expect = 7e-06
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 1/111 (0%)
 Frame = +3

Query: 465 SKIIPLFKSGSTFDPTN-FRPISVLPTLSKIFEKIILEQLLNHFYSNNLLHNKQYGFTXG 641
           S  I L    ++ +  N FRPIS++    KI  K++  +L        L+ +  YGF  G
Sbjct: 370 SSFITLVPKKTSLETVNDFRPISLMGISLKIVTKLLAGRLQGVILK--LVSDNHYGFIKG 427

Query: 642 RSTIDAGVDLIKNIFQAWEESHNALGVFCDLSKAFDCVEHNTLLRKLXHYG 794
           ++  D      + I Q  +     + +  D  KAFD +EH+ +L  + H G
Sbjct: 428 KTIQDCPAWPFEYIHQCQQSKREIVLLKLDFEKAFDTIEHSAILSVMQHMG 478


>12_01_1092 -
           11362094-11362367,11362739-11362795,11363256-11363683,
           11364350-11365462
          Length = 623

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 720 VFCDLSKAFDCVEHNTLLRKL 782
           V  D+SKAFDCV H+ +L+ +
Sbjct: 293 VVADVSKAFDCVSHDMVLKMI 313


>06_02_0178 +
           12652654-12652877,12652964-12653140,12653141-12653214,
           12653424-12653530,12653637-12653792,12653933-12654019,
           12654247-12654344,12654467-12654554,12654810-12654911
          Length = 370

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +3

Query: 168 RYFADIPASTTKSLI-SSPTVAESLLQDHVDECS-VNFKFTNIAIKDIIDNFKT 323
           RY   IP  T   ++   P   E   Q  +DE + V+ +FT +A++D+ D +KT
Sbjct: 306 RYGTPIPFPTPMHVVVGRPIEVEKNSQPTIDEINEVHEQFT-VALQDLFDKYKT 358


>02_01_0091 + 646299-649082
          Length = 927

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
 Frame = +3

Query: 75  PGHVSNSNAXSILQINAKXITSH--QAVASAFXRYFADIPASTT--KSLISSPTVAESLL 242
           PGH+S+S   ++  I    + +H  QAV SA       +  ST+  KSL  +  V ES+ 
Sbjct: 169 PGHLSSSMRDALRSIGVTKLYAHQAQAVQSAVSGEHVVVSTSTSSGKSLCYNIPVLESIS 228

Query: 243 Q 245
           Q
Sbjct: 229 Q 229


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,095,790
Number of Sequences: 37544
Number of extensions: 324851
Number of successful extensions: 670
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)