Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_D14
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    29   1.0  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    27   4.0  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    26   7.1  

>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = +2

Query: 380 DMYEKEYDYLKSQIAFSNENIY 445
           ++Y KE D+L+++ AF NE+IY
Sbjct: 565 NLYFKEIDFLENEWAFLNEHIY 586


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +2

Query: 278 EITVSLGADYFAKCSLK-QAEILKQHRIKDAETKVDMYEKEYDYLKSQIAFSNENIYGT 451
           ++ +S+G +      LK   +I K + +KDA    DM +      +  +A+SN   YGT
Sbjct: 149 KVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGT 207


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +2

Query: 335 EILKQHRIKDAETK--VDMYEKEYDYLKSQIAFSNENI 442
           E L+ H+  +A  K  ++  EKE   L+SQ+  +NE +
Sbjct: 335 EQLESHKEAEASLKSQINFLEKEVSSLESQLKLANERL 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,553,834
Number of Sequences: 5004
Number of extensions: 46035
Number of successful extensions: 141
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)