Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_D14
         (790 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006625-4|AAK68276.1|  446|Caenorhabditis elegans Hypothetical ...    50   3e-06
Z98866-14|CAB11553.1|  524|Caenorhabditis elegans Hypothetical p...    33   0.18 
U23516-4|AAG38880.1|  210|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z81132-13|CAB03427.2|  308|Caenorhabditis elegans Hypothetical p...    29   5.0  
U00036-1|AAK29855.1|  152|Caenorhabditis elegans Hypothetical pr...    29   5.0  
AF303258-1|AAG50216.1|  152|Caenorhabditis elegans 3H288 protein.      29   5.0  

>AC006625-4|AAK68276.1|  446|Caenorhabditis elegans Hypothetical
           protein C55B7.5 protein.
          Length = 446

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 37/146 (25%), Positives = 61/146 (41%), Gaps = 1/146 (0%)
 Frame = +2

Query: 158 NYLKXLRALDLNVFADKLTVPTLVPIGNRILFRG-EIIHTNEITVSLGADYFAKCSLKQA 334
           NY K L       ++ KL  P L  I     F G  ++ TN++T+ +GA+Y+ +CS+  A
Sbjct: 29  NYEKVLERA--KEYSKKLEAPILAKICEVGYFCGAHVVRTNQVTMEMGANYYGECSIHTA 86

Query: 335 EILKQHRIKDAETKVDMYEKEYDYLKSQIAFSNENIYGTKAXXXXXXXXXXXDKAWRIKH 514
           E +   R+ +   + +        L  +I F+ +N                 D+      
Sbjct: 87  EKILDRRVSEMRRQREEGLDSIRMLDDKIKFAQDNFSSVSIDGGPIEIVEKYDEEMEKLF 146

Query: 515 RQNVRKYKKDQQIQEKINNLISDEEL 592
            QN RK KK  Q  E+   +I   +L
Sbjct: 147 YQN-RKNKKMSQNDEQNEKIIEKNKL 171


>Z98866-14|CAB11553.1|  524|Caenorhabditis elegans Hypothetical
           protein Y49E10.17 protein.
          Length = 524

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 18/49 (36%), Positives = 28/49 (57%)
 Frame = +2

Query: 122 LAAHAKHLQFWVNYLKXLRALDLNVFADKLTVPTLVPIGNRILFRGEII 268
           L  HAK  QF+V +LK L+A+ ++ F   L+       G+ + FR E+I
Sbjct: 419 LTCHAKQFQFFVKHLKHLKAMKVDFFGHNLSK------GDMMKFRDEVI 461


>U23516-4|AAG38880.1|  210|Caenorhabditis elegans Hypothetical
           protein B0416.3 protein.
          Length = 210

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/83 (21%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
 Frame = -3

Query: 398 ILFRTYLLWFQHLLFYVVLISRLVSTNTWQNNRPLKKP*SHLYVLFHL*IIYDCLLVLKL 219
           I+F ++      ++F V+++  ++ +  +   R  K       ++  + +IYD +L+  L
Sbjct: 74  IIFISFFGNATSVMFSVIILGSVLISTCYGAFRGAKMCLIPFVIIQLVFLIYDLILITIL 133

Query: 218 VLSI-YPQKHLSQVXVVPLNNLP 153
           +L++ +P+  LS +  +PL ++P
Sbjct: 134 LLAVVFPKMFLSALLRLPLEDIP 156


>Z81132-13|CAB03427.2|  308|Caenorhabditis elegans Hypothetical
           protein T26E4.14 protein.
          Length = 308

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -1

Query: 445 INVFIAKCYLTFQIIIFFFVHIYFGFSIFYSMLF*YLGLFQRTLGKII 302
           I V +   Y T +   F+++ I   F + Y++   Y+G  QR  G+I+
Sbjct: 101 IAVALPARYKTLEHDRFWYLLILIAFPVVYALALLYIGFTQRDPGRIV 148


>U00036-1|AAK29855.1|  152|Caenorhabditis elegans Hypothetical
           protein R151.9 protein.
          Length = 152

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = +2

Query: 224 LVPIGNRILFRGEIIHTNEITVSLGADYFAKCSLKQAEIL----KQHRIKDAET 373
           L+P+   +  R E+   ++  V +G  YF +   ++A+ +    K+H  K  ET
Sbjct: 66  LIPLSESLYIRAELSDPSKHLVEIGTGYFVELDREKAKAIFDRKKEHITKQVET 119


>AF303258-1|AAG50216.1|  152|Caenorhabditis elegans 3H288 protein.
          Length = 152

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = +2

Query: 224 LVPIGNRILFRGEIIHTNEITVSLGADYFAKCSLKQAEIL----KQHRIKDAET 373
           L+P+   +  R E+   ++  V +G  YF +   ++A+ +    K+H  K  ET
Sbjct: 66  LIPLSESLYIRAELSDPSKHLVEIGTGYFVELDREKAKAIFDRKKEHITKQVET 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,993,369
Number of Sequences: 27780
Number of extensions: 254079
Number of successful extensions: 893
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)