Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_D13
         (490 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce...    76   3e-15
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    28   0.66 
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    27   1.1  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    27   1.5  
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    27   2.0  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    25   6.1  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.1  

>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score = 75.8 bits (178), Expect = 3e-15
 Identities = 39/103 (37%), Positives = 57/103 (55%), Gaps = 1/103 (0%)
 Frame = +3

Query: 3   VIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRLKYAFTAPTRLVRKAWTDAKLNEKWTES 182
           ++D  RAL+D P S  PRQ IR   + LT   +K    A + +V K W    +  KW  S
Sbjct: 31  IVDHKRALIDSPCSEFPRQVIRYGSVVLTHIVMKLPRGARSGIVAKKWKAQDVCNKWASS 90

Query: 183 QWAQKLANKEKRAQMTDYDRFK-LTAARVKRNRARTAVFKSLK 308
            WA+KL  K+ R+Q+ D+DRF  +   + +R +   AV K+LK
Sbjct: 91  AWAKKLEAKKVRSQLNDFDRFAVMRLKKQRREQVNVAVAKALK 133


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 28.3 bits (60), Expect = 0.66
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 236 VICHLCALLFVR*LLGPLTFCPFFIEFSICPRF 138
           V+C  CAL  +R    P+ FCP  ++F+  P+F
Sbjct: 508 VVCRTCALSRMRGR--PVGFCPLQLDFNNWPKF 538


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 16/49 (32%), Positives = 20/49 (40%)
 Frame = -3

Query: 374 HFFRSRFRDIFLAEGTSTRSLHLQALEYGSPGTVPLNSCSC*LEPIVIC 228
           HF    F+  +   G +  S H   LE+GS     LN  S     I IC
Sbjct: 442 HFLTGNFKCAYSYLGFAIHSAHTLGLEHGSTDNSTLNEVSTEETSIRIC 490


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 18/68 (26%), Positives = 36/68 (52%)
 Frame = +3

Query: 123 TRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKS 302
           + L  +A  + +  E+  E++  +KLA +EKR +  +    K    R+++ RA+ A  K 
Sbjct: 703 SELSERAAQERERKEQAKEAKRLKKLAKEEKRLKKKEEKARKAEEKRLQKERAKYA--KQ 760

Query: 303 LKVKAARA 326
           +  ++A A
Sbjct: 761 MSRESAHA 768


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = -1

Query: 412 YFLAGFLVAFLVRTFFAAALGIFFLPKVPARAAFTFKLLNTAVLARFLLTR 260
           YF++ ++ +  + +F   + G+           F F +  TA+L+ FL+ R
Sbjct: 362 YFMSYYIFSNFLTSFLQVSYGLSIDMSSLTLNVFVFSMTTTAILSGFLMKR 412


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 25  WLMDPAVEYLGNRSA*TNSISQNSASNTRSQPLL 126
           ++ D AV Y  N+    NS++ ++A N  S PL+
Sbjct: 132 YMPDSAVAYNPNQDQFGNSVNVSAACNNVSAPLI 165


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 71  KPTPSHKIPPQIRVHSPYSSCE 136
           KP P+ ++ PQ  ++SP  S E
Sbjct: 377 KPKPAKELSPQATLNSPIQSAE 398


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,879,718
Number of Sequences: 5004
Number of extensions: 35214
Number of successful extensions: 87
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)