Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_D13
         (490 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81461-2|CAB03835.1|  135|Caenorhabditis elegans Hypothetical pr...    80   1e-15
U41549-2|AAA83282.1|  208|Caenorhabditis elegans Histone h1 like...    33   0.15 
AF012253-1|AAB66471.1|  208|Caenorhabditis elegans histone H1.3 ...    33   0.15 
Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical p...    32   0.19 
U56965-2|AAB52667.3|  581|Caenorhabditis elegans Hypothetical pr...    29   1.4  
L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore nu...    28   3.2  
U00068-1|AAA50745.1|   85|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z72516-2|CAA96689.2|  513|Caenorhabditis elegans Hypothetical pr...    27   5.5  
U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like pr...    27   9.7  
U41536-2|AAM51501.1| 1610|Caenorhabditis elegans Kinesin-like pr...    27   9.7  
U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like pr...    27   9.7  

>Z81461-2|CAB03835.1|  135|Caenorhabditis elegans Hypothetical
           protein C04F12.4 protein.
          Length = 135

 Score = 79.8 bits (188), Expect = 1e-15
 Identities = 42/102 (41%), Positives = 59/102 (57%)
 Frame = +3

Query: 3   VIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRLKYAFTAPTRLVRKAWTDAKLNEKWTES 182
           VID  R  +DGP S V R    L  L LTKF LK      T+ V+ A+  AK+ E + ++
Sbjct: 30  VIDGNRVQIDGPSSDVTRTVRNLKDLQLTKFVLKLRVGQRTKGVKAAFDAAKVTENFQKT 89

Query: 183 QWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLK 308
           QWA+K+A +  RA++TD++R+KL  A+  RNR        LK
Sbjct: 90  QWAKKIAQRAIRAKLTDFERYKLMKAKQMRNRIVRVELAKLK 131


>U41549-2|AAA83282.1|  208|Caenorhabditis elegans Histone h1 like
           protein 3 protein.
          Length = 208

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
 Frame = +3

Query: 90  KFRL--KYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAAR 263
           +FR+  K A  A   + +KA T     EK  +   AQK A  EK+A+ T   + K TA +
Sbjct: 108 RFRVTEKKAAAAKKPVAKKAAT----GEKKAKKPVAQKAATGEKKAKKTTATKTKKTADK 163

Query: 264 VKRNRARTAVFKSLKVKAARA 326
           VK+ ++   + K    K A++
Sbjct: 164 VKKVKSPKKIAKPTAKKVAKS 184


>AF012253-1|AAB66471.1|  208|Caenorhabditis elegans histone H1.3
           protein.
          Length = 208

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
 Frame = +3

Query: 90  KFRL--KYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAAR 263
           +FR+  K A  A   + +KA T     EK  +   AQK A  EK+A+ T   + K TA +
Sbjct: 108 RFRVTEKKAAAAKKPVAKKAAT----GEKKAKKPVAQKAATGEKKAKKTTATKTKKTADK 163

Query: 264 VKRNRARTAVFKSLKVKAARA 326
           VK+ ++   + K    K A++
Sbjct: 164 VKKVKSPKKIAKPTAKKVAKS 184


>Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical
           protein Y49E10.19 protein.
          Length = 1159

 Score = 32.3 bits (70), Expect = 0.19
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +3

Query: 177 ESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKAAR 323
           E+QWA     ++ RA +T+YDR K    R+      T     L V  AR
Sbjct: 807 EAQWAMLRHVEKHRALLTEYDRLKRDGPRIIDGPRGTITVSQLSVNMAR 855


>U56965-2|AAB52667.3|  581|Caenorhabditis elegans Hypothetical
           protein C15H9.5 protein.
          Length = 581

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -1

Query: 475 ILYSLLKICLSHITCRRHKNNYFLAGFLVAFLVRTFFAAALGIFF 341
           ILY  L +  SH+ CR +  N +     +A LV   F  AL +FF
Sbjct: 266 ILYFGLAVYWSHLLCRSNSENIYRVHKFMAVLV---FLKALSVFF 307


>L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore null
           protein 1 protein.
          Length = 1010

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = -3

Query: 353 RDIFLAEGTSTRSLHLQALEYGSPGTVPLNSCSC*LEP 240
           RDI LA  TS RS HL + +  +PGT  L S +  L P
Sbjct: 746 RDI-LAMNTSVRSPHLNSSKTAAPGTPSLMSQNVQLPP 782


>U00068-1|AAA50745.1|   85|Caenorhabditis elegans Hypothetical
           protein W04D12.1 protein.
          Length = 85

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 162 NEKWTESQWAQKLANKEKRAQMTDYDRFK 248
           N KW     A K+A KEK+ +M D ++ K
Sbjct: 43  NRKWKRIDSAVKVAKKEKKKKMKDEEKKK 71


>Z72516-2|CAA96689.2|  513|Caenorhabditis elegans Hypothetical
           protein T25G3.3 protein.
          Length = 513

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +2

Query: 146 DRC*TQ*KMDRKSMGPEVSEQREARTNDRLR*VQVNSCTS*EEPCQDCRIQELEGEGCAC 325
           D C    +   K +  +++ Q+E  TN  L+   V   T   + C DCR  E +    AC
Sbjct: 95  DACFVWTEAHSKRIKVKITIQKEVFTNTILQQAVVVEFTVHSQLCDDCRRAEAKDFWRAC 154

Query: 326 WYLRQ 340
             +RQ
Sbjct: 155 VQVRQ 159


>U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like
           protein protein 4,isoform c protein.
          Length = 1576

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +3

Query: 54  RQQIRLNQLHLTKFRLKYAFTAPTR--LVRKAWTDAKLNEKWTESQWAQKLANKEKRAQM 227
           R+++   ++ +T+ + ++A T   R  L       A++N+ W E        NKE++  +
Sbjct: 400 REEVETLRMQITQTKKEHAETEELRERLAESERLVAQMNKSWEERLKETDTLNKERQKDL 459

Query: 228 TD 233
           T+
Sbjct: 460 TE 461


>U41536-2|AAM51501.1| 1610|Caenorhabditis elegans Kinesin-like
           protein protein 4,isoform b protein.
          Length = 1610

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +3

Query: 54  RQQIRLNQLHLTKFRLKYAFTAPTR--LVRKAWTDAKLNEKWTESQWAQKLANKEKRAQM 227
           R+++   ++ +T+ + ++A T   R  L       A++N+ W E        NKE++  +
Sbjct: 400 REEVETLRMQITQTKKEHAETEELRERLAESERLVAQMNKSWEERLKETDTLNKERQKDL 459

Query: 228 TD 233
           T+
Sbjct: 460 TE 461


>U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like
           protein protein 4,isoform a protein.
          Length = 1595

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +3

Query: 54  RQQIRLNQLHLTKFRLKYAFTAPTR--LVRKAWTDAKLNEKWTESQWAQKLANKEKRAQM 227
           R+++   ++ +T+ + ++A T   R  L       A++N+ W E        NKE++  +
Sbjct: 400 REEVETLRMQITQTKKEHAETEELRERLAESERLVAQMNKSWEERLKETDTLNKERQKDL 459

Query: 228 TD 233
           T+
Sbjct: 460 TE 461


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,664,390
Number of Sequences: 27780
Number of extensions: 210828
Number of successful extensions: 664
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)