Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_D12
(486 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9Y333 Cluster: U6 snRNA-associated Sm-like protein LSm... 158 5e-38
UniRef50_Q9ES84 Cluster: SnRNP core protein SMX5d; n=12; Eukaryo... 156 2e-37
UniRef50_A6S4U0 Cluster: Putative uncharacterized protein; n=1; ... 118 7e-26
UniRef50_A1C7L1 Cluster: Small nuclear ribonucleoprotein (LSM2),... 115 7e-25
UniRef50_Q1E7Q6 Cluster: Putative uncharacterized protein; n=1; ... 114 1e-24
UniRef50_P38203 Cluster: U6 snRNA-associated Sm-like protein LSm... 107 1e-22
UniRef50_Q4S130 Cluster: Chromosome 1 SCAF14770, whole genome sh... 105 5e-22
UniRef50_Q4YPG0 Cluster: U6 snRNA-associated sm-like protein Lsm... 101 1e-20
UniRef50_A5DAN5 Cluster: Putative uncharacterized protein; n=1; ... 101 1e-20
UniRef50_Q5CYT7 Cluster: SnRNP core protein; n=1; Cryptosporidiu... 96 4e-19
UniRef50_UPI0000499737 Cluster: U6 snRNA-associated Sm-like prot... 85 8e-16
UniRef50_Q4UA02 Cluster: U6 snRNP protein Lsm2, putative; n=2; P... 80 3e-14
UniRef50_A4VD81 Cluster: Putative uncharacterized protein; n=1; ... 70 2e-11
UniRef50_Q7K018 Cluster: GM14851p; n=1; Drosophila melanogaster|... 69 4e-11
UniRef50_A2FH88 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 68 1e-10
UniRef50_A0CX56 Cluster: Chromosome undetermined scaffold_3, who... 68 1e-10
UniRef50_Q8SQK1 Cluster: U6 snRNA-ASSOCIATED RIBONUCLEOPROTEIN; ... 56 4e-07
UniRef50_Q4P7W4 Cluster: Putative uncharacterized protein; n=1; ... 56 6e-07
UniRef50_Q5CRM6 Cluster: Small nuclear ribonucleoprotein D1. SM ... 49 6e-05
UniRef50_Q01GR9 Cluster: RabGAP/TBC domain-containing protein-li... 47 2e-04
UniRef50_Q4N103 Cluster: Putative uncharacterized protein; n=1; ... 46 3e-04
UniRef50_Q4QBP1 Cluster: Small nuclear ribonucleoprotein, putati... 44 0.001
UniRef50_UPI0000E480CE Cluster: PREDICTED: similar to LSM10, U7 ... 44 0.002
UniRef50_Q7QTN4 Cluster: GLP_0_18571_18248; n=1; Giardia lamblia... 44 0.002
UniRef50_Q9QXA5 Cluster: U6 snRNA-associated Sm-like protein LSm... 44 0.002
UniRef50_A7TI36 Cluster: Putative uncharacterized protein; n=1; ... 43 0.003
UniRef50_Q54KX4 Cluster: LSM (Like-Sm) domain-containing protein... 42 0.007
UniRef50_Q9LGE6 Cluster: Probable U6 snRNA-associated Sm-like pr... 42 0.010
UniRef50_Q9Y4Z0 Cluster: U6 snRNA-associated Sm-like protein LSm... 42 0.010
UniRef50_A7PS14 Cluster: Chromosome chr14 scaffold_27, whole gen... 40 0.023
UniRef50_Q54F84 Cluster: Putative uncharacterized protein; n=1; ... 40 0.039
UniRef50_Q5DHE3 Cluster: SJCHGC05980 protein; n=2; Schistosoma j... 38 0.16
UniRef50_Q96UG3 Cluster: Putative uncharacterized protein putati... 38 0.16
UniRef50_Q7QST9 Cluster: GLP_127_22232_21855; n=1; Giardia lambl... 36 0.37
UniRef50_Q5KJW6 Cluster: Glycine rich protein, putative; n=2; Di... 36 0.37
UniRef50_A4RMI1 Cluster: Putative uncharacterized protein; n=3; ... 36 0.37
UniRef50_A3LPF4 Cluster: Predicted protein; n=3; Saccharomycetac... 36 0.37
UniRef50_A7F5M4 Cluster: Putative uncharacterized protein; n=4; ... 36 0.64
UniRef50_A3H6D3 Cluster: Like-Sm ribonucleoprotein, core; n=1; C... 36 0.64
UniRef50_A2E4T4 Cluster: Putative uncharacterized protein; n=1; ... 35 0.85
UniRef50_Q751K2 Cluster: AGL296Wp; n=1; Eremothecium gossypii|Re... 35 1.1
UniRef50_A3H8P4 Cluster: Like-Sm ribonucleoprotein, core; n=1; C... 34 2.0
UniRef50_P62312 Cluster: U6 snRNA-associated Sm-like protein LSm... 34 2.0
UniRef50_A0CT01 Cluster: Chromosome undetermined scaffold_266, w... 33 2.6
UniRef50_A0C2U8 Cluster: Chromosome undetermined scaffold_145, w... 33 2.6
UniRef50_Q3LWH6 Cluster: MRNA splicing factor snRNP Sm-D; n=1; B... 33 3.4
UniRef50_Q4MZK0 Cluster: U6 snRNA-associated protein, putative; ... 33 3.4
UniRef50_A7AWX9 Cluster: U6 snRNA-associated Sm-like protein LSm... 33 3.4
UniRef50_Q4UBR6 Cluster: U6 snrna-associated sm-like protein lsm... 33 4.5
UniRef50_Q0UQD0 Cluster: Putative uncharacterized protein; n=1; ... 33 4.5
UniRef50_A0WAR4 Cluster: Putative uncharacterized protein precur... 32 6.0
UniRef50_Q7R303 Cluster: GLP_385_20544_20344; n=1; Giardia lambl... 32 6.0
UniRef50_Q8ZVU2 Cluster: Small nuclear ribonucleoprotein homolog... 32 6.0
UniRef50_Q6BR90 Cluster: Similar to CA5853|CaLSM6 Candida albica... 32 7.9
>UniRef50_Q9Y333 Cluster: U6 snRNA-associated Sm-like protein LSm2;
n=31; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm2 - Homo sapiens (Human)
Length = 95
Score = 158 bits (384), Expect = 5e-38
Identities = 79/90 (87%), Positives = 80/90 (88%)
Frame = +3
Query: 36 MLFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNC 215
MLF SFFKSLVG VVV L N LSICG LHSVDQ LNIKL+DISV D EKYPHMLSVKNC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 216 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 305
FIRGSVVRYVQLPADEVDTQLLQDAARKEA
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 90
>UniRef50_Q9ES84 Cluster: SnRNP core protein SMX5d; n=12;
Eukaryota|Rep: SnRNP core protein SMX5d - Mus musculus
(Mouse)
Length = 119
Score = 156 bits (379), Expect = 2e-37
Identities = 78/89 (87%), Positives = 79/89 (88%)
Frame = +3
Query: 39 LFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNCF 218
LF SFFKSLVG VVV L N LSICG LHSVDQ LNIKL+DISV D EKYPHMLSVKNCF
Sbjct: 26 LFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCF 85
Query: 219 IRGSVVRYVQLPADEVDTQLLQDAARKEA 305
IRGSVVRYVQLPADEVDTQLLQDAARKEA
Sbjct: 86 IRGSVVRYVQLPADEVDTQLLQDAARKEA 114
>UniRef50_A6S4U0 Cluster: Putative uncharacterized protein; n=1;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 157
Score = 118 bits (284), Expect = 7e-26
Identities = 59/97 (60%), Positives = 69/97 (71%)
Frame = +3
Query: 15 FKQTKRKMLFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPH 194
F+ + KMLF SFFK+LV V V L N + I G L SVDQ LNIKL DI V++ KYPH
Sbjct: 53 FRDSSAKMLFFSFFKTLVDHEVTVELKNDIQIKGILKSVDQYLNIKLDDIQVVEELKYPH 112
Query: 195 MLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEA 305
+ SVKN FIRGSVVRYV LP +DT LL+DA R+EA
Sbjct: 113 LSSVKNVFIRGSVVRYVHLPGGVIDTALLEDATRREA 149
>UniRef50_A1C7L1 Cluster: Small nuclear ribonucleoprotein (LSM2),
putative; n=5; Fungi/Metazoa group|Rep: Small nuclear
ribonucleoprotein (LSM2), putative - Aspergillus
clavatus
Length = 98
Score = 115 bits (276), Expect = 7e-25
Identities = 56/90 (62%), Positives = 65/90 (72%)
Frame = +3
Query: 36 MLFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNC 215
MLF SFFK+L V + L N + I G L SVDQ LNIKL D+ V+D +KYPH+ SVKN
Sbjct: 1 MLFFSFFKTLTNQTVTIELKNDIRIRGTLKSVDQYLNIKLDDVDVLDLDKYPHLSSVKNM 60
Query: 216 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 305
FIRGSVVRYV LP EVD LL+DA R+EA
Sbjct: 61 FIRGSVVRYVMLPRSEVDVGLLEDATRREA 90
>UniRef50_Q1E7Q6 Cluster: Putative uncharacterized protein; n=1;
Coccidioides immitis|Rep: Putative uncharacterized
protein - Coccidioides immitis
Length = 178
Score = 114 bits (274), Expect = 1e-24
Identities = 57/95 (60%), Positives = 68/95 (71%)
Frame = +3
Query: 21 QTKRKMLFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHML 200
+T MLF SFFK+L V++ L N + I G L SVDQ LNIKL DI VID +KYPH+
Sbjct: 76 KTSVTMLFFSFFKTLTNHTVIIELKNDIRIRGILKSVDQYLNIKLDDIEVIDLDKYPHLS 135
Query: 201 SVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEA 305
SVKN FIRGSVVRY+ LP + VD LL+DA R+EA
Sbjct: 136 SVKNIFIRGSVVRYIVLPQEAVDRGLLEDATRREA 170
>UniRef50_P38203 Cluster: U6 snRNA-associated Sm-like protein LSm2;
n=28; Fungi/Metazoa group|Rep: U6 snRNA-associated
Sm-like protein LSm2 - Saccharomyces cerevisiae (Baker's
yeast)
Length = 95
Score = 107 bits (257), Expect = 1e-22
Identities = 55/89 (61%), Positives = 64/89 (71%)
Frame = +3
Query: 36 MLFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNC 215
MLF SFFK+LV VVV L N + I G L SVDQ LN+KL +IS D +KYPH+ SV+N
Sbjct: 1 MLFFSFFKTLVDQEVVVELKNDIEIKGTLQSVDQFLNLKLDNISCTDEKKYPHLGSVRNI 60
Query: 216 FIRGSVVRYVQLPADEVDTQLLQDAARKE 302
FIRGS VRYV L + VDT LLQDA R+E
Sbjct: 61 FIRGSTVRYVYLNKNMVDTNLLQDATRRE 89
>UniRef50_Q4S130 Cluster: Chromosome 1 SCAF14770, whole genome
shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
Chromosome 1 SCAF14770, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 135
Score = 105 bits (252), Expect = 5e-22
Identities = 52/66 (78%), Positives = 55/66 (83%)
Frame = +3
Query: 39 LFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNCF 218
LF SFFKSLVG VVV L N LSICG LHSVDQ LNIKL+DISV D EKYPHMLSV++C
Sbjct: 2 LFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVRDCI 61
Query: 219 IRGSVV 236
IRGSVV
Sbjct: 62 IRGSVV 67
>UniRef50_Q4YPG0 Cluster: U6 snRNA-associated sm-like protein Lsm2,
putative; n=5; Plasmodium (Vinckeia)|Rep: U6
snRNA-associated sm-like protein Lsm2, putative -
Plasmodium berghei
Length = 125
Score = 101 bits (241), Expect = 1e-20
Identities = 50/91 (54%), Positives = 66/91 (72%), Gaps = 2/91 (2%)
Frame = +3
Query: 39 LFSSFFKSLV--GXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKN 212
LF +FF+ L + + L N L I G LHSVDQ LNIKL++ISV + EKYPH+LS+K
Sbjct: 23 LFFTFFQQLAEKNQHITIELKNDLQISGVLHSVDQYLNIKLTNISVNNPEKYPHLLSIKT 82
Query: 213 CFIRGSVVRYVQLPADEVDTQLLQDAARKEA 305
CF+RGSVVRYV LP++EV+ + L+ R+EA
Sbjct: 83 CFVRGSVVRYVFLPSNEVNIEKLRHMCRQEA 113
>UniRef50_A5DAN5 Cluster: Putative uncharacterized protein; n=1;
Pichia guilliermondii|Rep: Putative uncharacterized
protein - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 195
Score = 101 bits (241), Expect = 1e-20
Identities = 49/88 (55%), Positives = 63/88 (71%)
Frame = +3
Query: 36 MLFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNC 215
MLF SFFK+LV V V L N + I G L +VDQ LN+KL ++ ++ +KYPHM SVKN
Sbjct: 1 MLFFSFFKTLVDQEVTVELKNDIEIRGTLKTVDQYLNLKLDNVICLNEDKYPHMQSVKNL 60
Query: 216 FIRGSVVRYVQLPADEVDTQLLQDAARK 299
FIRGS VRYV + ++ VD LLQDA+R+
Sbjct: 61 FIRGSTVRYVHMSSNTVDCTLLQDASRR 88
>UniRef50_Q5CYT7 Cluster: SnRNP core protein; n=1; Cryptosporidium
parvum Iowa II|Rep: SnRNP core protein - Cryptosporidium
parvum Iowa II
Length = 107
Score = 95.9 bits (228), Expect = 4e-19
Identities = 49/90 (54%), Positives = 63/90 (70%), Gaps = 2/90 (2%)
Frame = +3
Query: 39 LFSSFFKSLVGXAVVVX--LXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKN 212
LF +F ++L+ VVV L N L I G LHS+DQ LNIKL++ +V +E + H+ S+KN
Sbjct: 6 LFFNFLQTLIEKQVVVTVELKNDLQITGTLHSIDQYLNIKLNNTTVNQNESFIHLGSLKN 65
Query: 213 CFIRGSVVRYVQLPADEVDTQLLQDAARKE 302
CFIRGSVVRY+ P EVD +LLQ A RKE
Sbjct: 66 CFIRGSVVRYIFFPPSEVDIELLQKACRKE 95
>UniRef50_UPI0000499737 Cluster: U6 snRNA-associated Sm-like protein
LSm2; n=1; Entamoeba histolytica HM-1:IMSS|Rep: U6
snRNA-associated Sm-like protein LSm2 - Entamoeba
histolytica HM-1:IMSS
Length = 96
Score = 85.0 bits (201), Expect = 8e-16
Identities = 42/89 (47%), Positives = 60/89 (67%)
Frame = +3
Query: 36 MLFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNC 215
MLF SFFK+L+G VVV L N + I G L +VDQ LNIKL+++ D+ +P + ++ +C
Sbjct: 1 MLFYSFFKTLIGKEVVVELKNDVIITGTLIAVDQMLNIKLNNLK-CDATLFPQIQTMTDC 59
Query: 216 FIRGSVVRYVQLPADEVDTQLLQDAARKE 302
FIRG+ +RYV + + +D QLL DA E
Sbjct: 60 FIRGNTIRYVSMAENNIDVQLLHDATLLE 88
>UniRef50_Q4UA02 Cluster: U6 snRNP protein Lsm2, putative; n=2;
Piroplasmida|Rep: U6 snRNP protein Lsm2, putative -
Theileria annulata
Length = 112
Score = 79.8 bits (188), Expect = 3e-14
Identities = 38/75 (50%), Positives = 54/75 (72%), Gaps = 5/75 (6%)
Frame = +3
Query: 96 NALSICGPLHSVDQXLNIKLSDISVIDSEKYPHM-----LSVKNCFIRGSVVRYVQLPAD 260
N L I G LHSVDQ LNIKL++++ D+++YPH+ LSV NCF+RGSVVRYV
Sbjct: 29 NDLQISGKLHSVDQYLNIKLTNVTANDTQRYPHLVLIYKLSVVNCFVRGSVVRYVFFNPS 88
Query: 261 EVDTQLLQDAARKEA 305
+++T+ LQ+ R++A
Sbjct: 89 DINTEELQELCRRQA 103
>UniRef50_A4VD81 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 171
Score = 70.1 bits (164), Expect = 2e-11
Identities = 40/102 (39%), Positives = 58/102 (56%), Gaps = 2/102 (1%)
Frame = +3
Query: 3 FQRVFKQTKRKMLFSSFFKSLV--GXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVID 176
F + Q + LF+SFF++L+ + V L N + I G + VD +N L DI D
Sbjct: 67 FLNIQIQMAERQLFASFFRTLLDKNAVITVELKNDVKIKGKITYVDGNMNFNLVDIQ--D 124
Query: 177 SEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKE 302
E + + KNCFIRGS VRYV L +++D +L+Q+A KE
Sbjct: 125 QETV-QLANFKNCFIRGSSVRYVHLEKEDIDVELIQEACLKE 165
>UniRef50_Q7K018 Cluster: GM14851p; n=1; Drosophila
melanogaster|Rep: GM14851p - Drosophila melanogaster
(Fruit fly)
Length = 123
Score = 69.3 bits (162), Expect = 4e-11
Identities = 38/100 (38%), Positives = 55/100 (55%)
Frame = +2
Query: 35 NVVFLVFQIVSRXGCRRRAXKCPQHLWAVAFCGSXSQYKAFGYKRD*L*KVSSYVISEKL 214
N + L+ Q+ G R K PQH+W A GS +++A GY+ +V + ++L
Sbjct: 13 NALLLLLQVAGGQGSRCGVEKRPQHMWHPALGGSVPEHQADGYQCHRSGQVPPHAERQEL 72
Query: 215 FYKRLRGSIRTTAG**GRHPASPGCR*KGGDRFNKIELNL 334
+ LRG+IR AG G HPA+PGC KGG +KI + L
Sbjct: 73 LHPWLRGAIRAAAGRRGGHPAAPGCGAKGGCCEHKIRIPL 112
>UniRef50_A2FH88 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 94
Score = 67.7 bits (158), Expect = 1e-10
Identities = 32/89 (35%), Positives = 51/89 (57%)
Frame = +3
Query: 36 MLFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNC 215
MLF F++L G + V + N + I G L S+D NIKL + D+ + ++
Sbjct: 1 MLFLHVFRTLQGKRITVHVKNGIVIEGTLQSIDHFYNIKLINTETKDAGNLNMVSTLSTA 60
Query: 216 FIRGSVVRYVQLPADEVDTQLLQDAARKE 302
+IRG+ V Y++LP DE+D +L DA R++
Sbjct: 61 YIRGTSVLYIELPKDEIDLNILHDATRRQ 89
>UniRef50_A0CX56 Cluster: Chromosome undetermined scaffold_3, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_3,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 100
Score = 67.7 bits (158), Expect = 1e-10
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Frame = +3
Query: 30 RKMLFSSFFKSLVGX--AVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLS 203
+ F ++F+ L+ +V + L N L I G + VD LN L D V D K P +++
Sbjct: 2 QSQFFQTYFRGLIERCVSVTIELKNGLQIQGQITYVDDNLNFNLVDPEVSDPLKQPQLMT 61
Query: 204 VKNCFIRGSVVRYVQLPADEVDTQLLQDAARKE 302
++N FIRGS V+YV +P +E+ ++L A + E
Sbjct: 62 LRNSFIRGSTVKYVHIPQEELQEEVLISACKNE 94
>UniRef50_Q8SQK1 Cluster: U6 snRNA-ASSOCIATED RIBONUCLEOPROTEIN;
n=1; Encephalitozoon cuniculi|Rep: U6 snRNA-ASSOCIATED
RIBONUCLEOPROTEIN - Encephalitozoon cuniculi
Length = 94
Score = 56.0 bits (129), Expect = 4e-07
Identities = 30/83 (36%), Positives = 48/83 (57%)
Frame = +3
Query: 36 MLFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNC 215
MLF FF+S +G V V L + + G L +D LN+ L D+ ++ S +P + S+ C
Sbjct: 1 MLFYEFFRSSIGSRVSVMLKAGVYVSGRLGGIDPYLNLSLLDVRILSS--HPGLSSISVC 58
Query: 216 FIRGSVVRYVQLPADEVDTQLLQ 284
IRGS ++Y+ + + D +LLQ
Sbjct: 59 SIRGSSIKYILV---DKDAKLLQ 78
>UniRef50_Q4P7W4 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 171
Score = 55.6 bits (128), Expect = 6e-07
Identities = 25/36 (69%), Positives = 31/36 (86%)
Frame = +3
Query: 198 LSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEA 305
++VK+ FIRGSVVRYV +PA VDTQLL+DA R+EA
Sbjct: 130 MAVKSAFIRGSVVRYVHIPAAAVDTQLLEDATRREA 165
>UniRef50_Q5CRM6 Cluster: Small nuclear ribonucleoprotein D1. SM
domain containing protein; n=2; Cryptosporidium|Rep:
Small nuclear ribonucleoprotein D1. SM domain containing
protein - Cryptosporidium parvum Iowa II
Length = 137
Score = 48.8 bits (111), Expect = 6e-05
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Frame = +3
Query: 12 VFKQTKRKMLFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYP 191
+ ++RKM F LV +VV+ L N I G + +VD +N L ++ + S K+
Sbjct: 4 IHNTSRRKMKLIRFLMKLVNNSVVIELKNGTIIQGTIVTVDMSMNTYLKNVKM--SVKHR 61
Query: 192 HMLSVKNCFIRGSVVRYVQLPAD-EVDTQLLQDAARK 299
+ +S+ +RG+ +RY LP +D L+ D ++
Sbjct: 62 NPVSLSQITVRGNTIRYFILPDSLPLDALLIDDTPKQ 98
>UniRef50_Q01GR9 Cluster: RabGAP/TBC domain-containing protein-like;
n=2; Ostreococcus|Rep: RabGAP/TBC domain-containing
protein-like - Ostreococcus tauri
Length = 523
Score = 47.2 bits (107), Expect = 2e-04
Identities = 27/88 (30%), Positives = 46/88 (52%)
Frame = -2
Query: 302 LLSSGILEKLGVYLISRQLYVSNHGASYKTIFH**HMRILFRVNHAYIRKLYIEXLIHRM 123
L + ++E + V L+VS+H ++ +T+ H H+R+ + H I KL ++ LIHR
Sbjct: 368 LTTRRVVENVHVDAPLWNLHVSHHASANETVPHAPHVRVPLLIRHPRILKLNVQVLIHRD 427
Query: 122 QRPTDAEGIXQXDDDSLTD*RFEKRGKQ 39
+R D E + + D R + R KQ
Sbjct: 428 ERSRDGEIVLELHRHRFPDERLKVRVKQ 455
>UniRef50_Q4N103 Cluster: Putative uncharacterized protein; n=1;
Theileria parva|Rep: Putative uncharacterized protein -
Theileria parva
Length = 55
Score = 46.4 bits (105), Expect = 3e-04
Identities = 19/42 (45%), Positives = 31/42 (73%)
Frame = +3
Query: 180 EKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEA 305
+ + ++LSV NCF+RGSVVRYV +++T+ LQ+ R++A
Sbjct: 5 DSFLNLLSVVNCFVRGSVVRYVFFNPSDINTEELQELCRRQA 46
>UniRef50_Q4QBP1 Cluster: Small nuclear ribonucleoprotein, putative;
n=5; Trypanosomatidae|Rep: Small nuclear
ribonucleoprotein, putative - Leishmania major
Length = 103
Score = 44.4 bits (100), Expect = 0.001
Identities = 25/91 (27%), Positives = 44/91 (48%)
Frame = +3
Query: 48 SFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNCFIRG 227
+F + L G V + L NA + G + VD +N +S + K P + V+ +RG
Sbjct: 15 TFLQQLRGTLVEIELKNASIVSGEIAYVDANMNTYMSHAKITSKGKNP--VEVEEYMVRG 72
Query: 228 SVVRYVQLPADEVDTQLLQDAARKEATVSTR 320
S +RY+ +P +L+ A+ K+ S +
Sbjct: 73 STIRYIIMPESLNTYDILKQASTKKNGASKK 103
>UniRef50_UPI0000E480CE Cluster: PREDICTED: similar to LSM10, U7
small nuclear RNA associated; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to LSM10, U7 small
nuclear RNA associated - Strongylocentrotus purpuratus
Length = 124
Score = 44.0 bits (99), Expect = 0.002
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Frame = +3
Query: 27 KRKMLFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVI--DSEKYPHML 200
K K +++VG V L N S G + VD +N+ +S + + D EK HM
Sbjct: 12 KSKHTMVCLLRAVVGRITTVELRNECSATGYVVDVDGFMNVTMSKVLFVNMDGEK-THMD 70
Query: 201 SVKNCFIRGSVVRYVQLPAD 260
S+ FI+ S+VRYVQ+P D
Sbjct: 71 SI---FIQASLVRYVQIPDD 87
>UniRef50_Q7QTN4 Cluster: GLP_0_18571_18248; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_0_18571_18248 - Giardia lamblia ATCC
50803
Length = 107
Score = 44.0 bits (99), Expect = 0.002
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Frame = +3
Query: 36 MLFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSE-KYPHMLSVKN 212
ML+ +F LVG V V L + + + G L + D N+ L + + S+ + H+ +
Sbjct: 1 MLYLTFLSKLVGRKVYVELKSGMQMHGVLLASDNFANLSLDNPVIYGSDISFTHVSGGRR 60
Query: 213 CFIRGSVVRYVQLPADEVDTQLLQDAARKEATVS 314
FIRGS ++++ L E D L A ++ ++
Sbjct: 61 VFIRGSAIQFLYLNDVEGDESLSLRALADDSRIN 94
>UniRef50_Q9QXA5 Cluster: U6 snRNA-associated Sm-like protein LSm4;
n=128; Eukaryota|Rep: U6 snRNA-associated Sm-like
protein LSm4 - Mus musculus (Mouse)
Length = 137
Score = 44.0 bits (99), Expect = 0.002
Identities = 26/87 (29%), Positives = 46/87 (52%)
Frame = +3
Query: 36 MLFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNC 215
ML S K+ ++V L N + G L S D +NI L ++ + S + C
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREV-ICTSRDGDKFWRMPEC 59
Query: 216 FIRGSVVRYVQLPADEVDTQLLQDAAR 296
+IRGS ++Y+++P DE+ + ++AA+
Sbjct: 60 YIRGSTIKYLRIP-DEIIDMVREEAAK 85
>UniRef50_A7TI36 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 193
Score = 43.2 bits (97), Expect = 0.003
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Frame = +3
Query: 69 GXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSE------KYPHMLSVKNCFIRGS 230
G + + L N +I G L +VD +N+ LSD+ DS+ + P LSV ++RG+
Sbjct: 12 GQKITIELKNGETIKGVLTNVDNWMNLTLSDVIQYDSDALNNGAEKPEGLSVPEIYLRGT 71
Query: 231 VVRYVQLPADEVD 269
++Y+ L D ++
Sbjct: 72 YIKYINLQDDIIE 84
>UniRef50_Q54KX4 Cluster: LSM (Like-Sm) domain-containing protein;
n=1; Dictyostelium discoideum AX4|Rep: LSM (Like-Sm)
domain-containing protein - Dictyostelium discoideum AX4
Length = 177
Score = 41.9 bits (94), Expect = 0.007
Identities = 21/78 (26%), Positives = 43/78 (55%)
Frame = +3
Query: 36 MLFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNC 215
ML S ++ G ++V L N + G L + D +NI L ++ + S+ +++C
Sbjct: 1 MLPLSLLRTGQGHQIMVELKNGETYNGLLVNCDNWMNINLKNV-IRTSKDSDKFWKIQSC 59
Query: 216 FIRGSVVRYVQLPADEVD 269
+IRG+ ++Y+ +P + +D
Sbjct: 60 YIRGNTIKYISVPDEIID 77
>UniRef50_Q9LGE6 Cluster: Probable U6 snRNA-associated Sm-like
protein LSm4; n=5; Eukaryota|Rep: Probable U6
snRNA-associated Sm-like protein LSm4 - Oryza sativa
subsp. japonica (Rice)
Length = 147
Score = 41.5 bits (93), Expect = 0.010
Identities = 24/90 (26%), Positives = 49/90 (54%)
Frame = +3
Query: 36 MLFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNC 215
ML S K+ G ++V L N + G L + D +NI L ++ + S+ + C
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREV-ICTSKDGDKFWRMPEC 59
Query: 216 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 305
+IRG+ ++Y+++P DEV ++ ++ ++ +
Sbjct: 60 YIRGNTIKYLRVP-DEVIDKVQEETSKSRS 88
>UniRef50_Q9Y4Z0 Cluster: U6 snRNA-associated Sm-like protein LSm4;
n=5; Coelomata|Rep: U6 snRNA-associated Sm-like protein
LSm4 - Homo sapiens (Human)
Length = 139
Score = 41.5 bits (93), Expect = 0.010
Identities = 23/78 (29%), Positives = 40/78 (51%)
Frame = +3
Query: 36 MLFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNC 215
ML S K+ ++V L N + G L S D +NI L ++ + S + C
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREV-ICTSRDGDKFWRMPEC 59
Query: 216 FIRGSVVRYVQLPADEVD 269
+IRGS ++Y+++P + +D
Sbjct: 60 YIRGSTIKYLRIPDEIID 77
>UniRef50_A7PS14 Cluster: Chromosome chr14 scaffold_27, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr14 scaffold_27, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 281
Score = 40.3 bits (90), Expect = 0.023
Identities = 20/74 (27%), Positives = 40/74 (54%)
Frame = +3
Query: 48 SFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNCFIRG 227
S K+ G ++V L N + G L + D +NI L ++ + S+ + C+IRG
Sbjct: 91 SLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREV-ICTSKDGDRFWRMPECYIRG 149
Query: 228 SVVRYVQLPADEVD 269
+ ++Y+++P + +D
Sbjct: 150 NTIKYLRVPDEVID 163
>UniRef50_Q54F84 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 137
Score = 39.5 bits (88), Expect = 0.039
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Frame = +3
Query: 54 FKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSE-KYPHMLSVKNCFIRGS 230
F +L G + + L + I G + +VD LNI+LSD + ++ K V+ I+
Sbjct: 35 FTALRGTQITIQLRSNCEIYGTITNVDAYLNIELSDAKLTNTRYKNKRDEHVQEILIQSR 94
Query: 231 VVRYVQLPADEVDTQLLQDAARKEATVSTR 320
+R++Q+P D++D L K+ + S +
Sbjct: 95 NIRFIQIP-DKIDLNSLLYLYSKQLSQSKK 123
>UniRef50_Q5DHE3 Cluster: SJCHGC05980 protein; n=2; Schistosoma
japonicum|Rep: SJCHGC05980 protein - Schistosoma
japonicum (Blood fluke)
Length = 207
Score = 37.5 bits (83), Expect = 0.16
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Frame = +3
Query: 39 LFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVI---DSEKYPHMLSVK 209
L + F +L+G + V L + I G L S D +NI+L +I +S++ + V+
Sbjct: 23 LIAIFPAALIGEPITVTLLDETRITGRLCSCDGMMNIQLDSGVIIRNPNSDRLNEFIQVE 82
Query: 210 NCFIRGSVVRYVQLP 254
I G +RYV +P
Sbjct: 83 TIMIFGQRIRYVTVP 97
>UniRef50_Q96UG3 Cluster: Putative uncharacterized protein putative
LSM4; n=1; Kluyveromyces lactis|Rep: Putative
uncharacterized protein putative LSM4 - Kluyveromyces
lactis (Yeast) (Candida sphaerica)
Length = 183
Score = 37.5 bits (83), Expect = 0.16
Identities = 20/67 (29%), Positives = 38/67 (56%)
Frame = +3
Query: 69 GXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQ 248
G + V L N ++ G L VD +N+ LS+++ + S + L + + +++GS ++YV
Sbjct: 12 GQTMHVELKNGETVEGTLSDVDNWMNLTLSNVTHVASGE---TLKLPSFYLKGSFIKYVN 68
Query: 249 LPADEVD 269
L D +D
Sbjct: 69 LQDDIID 75
>UniRef50_Q7QST9 Cluster: GLP_127_22232_21855; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_127_22232_21855 - Giardia lamblia
ATCC 50803
Length = 125
Score = 36.3 bits (80), Expect = 0.37
Identities = 20/64 (31%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = +3
Query: 66 VGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSE-KYPHMLSVKNCFIRGSVVRY 242
V +V+ L ++ +I G L +VD +N+ LSD+++ID+E K H + ++GS++
Sbjct: 19 VNYYMVIALKDSTTIQGVLRNVDVQMNMVLSDVTMIDTESKSSHYPTYS---LQGSLISS 75
Query: 243 VQLP 254
+++P
Sbjct: 76 IRIP 79
>UniRef50_Q5KJW6 Cluster: Glycine rich protein, putative; n=2;
Dikarya|Rep: Glycine rich protein, putative -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 117
Score = 36.3 bits (80), Expect = 0.37
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Frame = +3
Query: 36 MLFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDI--SVIDSEKYPHMLSVK 209
ML S + G ++V L N ++ G L D +N+ L ++ + D E++ M K
Sbjct: 1 MLPLSLLTAAQGKPMLVELKNGVTFNGHLVECDTFMNVTLREVYQTSADGERFWKM---K 57
Query: 210 NCFIRGSVVRYVQLPADEVDTQLLQDAARKEATVSTR 320
FI+G++++Y ++ AD + Q ++ + A R
Sbjct: 58 EMFIKGNIIKYFRI-ADNILEQAAEEQDKARAANRAR 93
>UniRef50_A4RMI1 Cluster: Putative uncharacterized protein; n=3;
Fungi/Metazoa group|Rep: Putative uncharacterized
protein - Magnaporthe grisea (Rice blast fungus)
(Pyricularia grisea)
Length = 125
Score = 36.3 bits (80), Expect = 0.37
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Frame = +3
Query: 51 FFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNCFIRGS 230
F V + L N + G + SV +N L ++ + + P L N IRGS
Sbjct: 6 FLMKCANETVTIELKNGTIVHGTIASVSPQMNTALRNVKMTPRGQDPIPLDAMN--IRGS 63
Query: 231 VVRYVQLPAD-EVDTQLLQDAAR 296
+RY LP +DT L+ D +
Sbjct: 64 TIRYYILPDSLPLDTLLVDDTPK 86
>UniRef50_A3LPF4 Cluster: Predicted protein; n=3;
Saccharomycetaceae|Rep: Predicted protein - Pichia
stipitis (Yeast)
Length = 147
Score = 36.3 bits (80), Expect = 0.37
Identities = 17/64 (26%), Positives = 36/64 (56%)
Frame = +3
Query: 78 VVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQLPA 257
+++ L N ++ G L + D +N+ L D+ + S L + +IRG+ ++Y++LP
Sbjct: 15 ILIELKNGETLNGGLVNCDSWMNLTLKDV-IQTSSNGETFLKIPEVYIRGNHIKYLRLPE 73
Query: 258 DEVD 269
+ +D
Sbjct: 74 EIMD 77
>UniRef50_A7F5M4 Cluster: Putative uncharacterized protein; n=4;
Pezizomycotina|Rep: Putative uncharacterized protein -
Sclerotinia sclerotiorum 1980
Length = 95
Score = 35.5 bits (78), Expect = 0.64
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = +3
Query: 45 SSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKL 155
SSF ++G V+V L N+L G L SVD +NI L
Sbjct: 15 SSFLSDIIGSRVIVKLNNSLVFKGELQSVDGYMNIAL 51
>UniRef50_A3H6D3 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Caldivirga maquilingensis IC-167|Rep: Like-Sm
ribonucleoprotein, core - Caldivirga maquilingensis
IC-167
Length = 86
Score = 35.5 bits (78), Expect = 0.64
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +3
Query: 63 LVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRY 242
+V +VVV L + G L +DQ +NI L D +D+ ++ IRG+ V Y
Sbjct: 19 MVNKSVVVKLKAGRVLSGTLRFIDQCMNIVLDDAEELDTRTNQVIVRYGKVLIRGNQVLY 78
Query: 243 VQL 251
V +
Sbjct: 79 VSV 81
>UniRef50_A2E4T4 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 111
Score = 35.1 bits (77), Expect = 0.85
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Frame = +3
Query: 51 FFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNCFIRGS 230
F + LV V V L + I G + VD +N L + + + L +N IRG+
Sbjct: 6 FLRKLVRETVTVELKDNTVIKGTVVGVDSAMNTHLRLVHIKAPGQEEKRL--ENLTIRGA 63
Query: 231 VVRYVQLP-ADEVDTQLLQDAARK 299
+RYV LP +DT L+ D+ K
Sbjct: 64 SIRYVILPDVLNLDTLLVDDSPTK 87
>UniRef50_Q751K2 Cluster: AGL296Wp; n=1; Eremothecium gossypii|Rep:
AGL296Wp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 168
Score = 34.7 bits (76), Expect = 1.1
Identities = 18/67 (26%), Positives = 36/67 (53%)
Frame = +3
Query: 69 GXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQ 248
G + + L N +I G L +VD +N+ L + S++ L + ++RGS ++Y++
Sbjct: 12 GQKLFIELKNGETIEGELVNVDNWMNLTLQSVVHAGSDQ---TLQLPEIYVRGSFIKYIR 68
Query: 249 LPADEVD 269
L D ++
Sbjct: 69 LQDDIIE 75
>UniRef50_A3H8P4 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Caldivirga maquilingensis IC-167|Rep: Like-Sm
ribonucleoprotein, core - Caldivirga maquilingensis
IC-167
Length = 140
Score = 33.9 bits (74), Expect = 2.0
Identities = 23/86 (26%), Positives = 41/86 (47%)
Frame = +3
Query: 42 FSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNCFI 221
F++ ++G V+V L G L +DQ LNI L D++ +E++P +L I
Sbjct: 10 FNAEVMGMLGRKVLVNLIGGSFYRGQLVGIDQGLNIVLVDVTNDRNERFPKVL------I 63
Query: 222 RGSVVRYVQLPADEVDTQLLQDAARK 299
+ +R + L + +D + L K
Sbjct: 64 KSEAIRDIALVEEYIDLRELAKILEK 89
>UniRef50_P62312 Cluster: U6 snRNA-associated Sm-like protein LSm6;
n=22; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm6 - Homo sapiens (Human)
Length = 80
Score = 33.9 bits (74), Expect = 2.0
Identities = 22/72 (30%), Positives = 34/72 (47%)
Frame = +3
Query: 30 RKMLFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVK 209
RK S F K ++G VVV L + + G L +D +NI L + + +
Sbjct: 4 RKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG-- 61
Query: 210 NCFIRGSVVRYV 245
+ FIRG+ V Y+
Sbjct: 62 DAFIRGNNVLYI 73
>UniRef50_A0CT01 Cluster: Chromosome undetermined scaffold_266,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_266,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 363
Score = 33.5 bits (73), Expect = 2.6
Identities = 14/59 (23%), Positives = 32/59 (54%)
Frame = +3
Query: 78 VVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQLP 254
V V L G + + +N++L ++ ++ + P +S++ ++RGS +R+V +P
Sbjct: 18 VTVELKTGEMFTGYMAEAEDTMNVRLDEVQMVTRDGRP--MSLEQVYLRGSQIRFVVIP 74
>UniRef50_A0C2U8 Cluster: Chromosome undetermined scaffold_145,
whole genome shotgun sequence; n=5; Eukaryota|Rep:
Chromosome undetermined scaffold_145, whole genome
shotgun sequence - Paramecium tetraurelia
Length = 122
Score = 33.5 bits (73), Expect = 2.6
Identities = 14/59 (23%), Positives = 32/59 (54%)
Frame = +3
Query: 78 VVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQLP 254
V V L G + + +N++L ++ ++ + P +S++ ++RGS +R+V +P
Sbjct: 18 VTVELKTGEMFTGYMAEAEDTMNVRLDEVQMVTRDGRP--MSLEQVYLRGSQIRFVVIP 74
>UniRef50_Q3LWH6 Cluster: MRNA splicing factor snRNP Sm-D; n=1;
Bigelowiella natans|Rep: MRNA splicing factor snRNP Sm-D
- Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 77
Score = 33.1 bits (72), Expect = 3.4
Identities = 22/69 (31%), Positives = 35/69 (50%)
Frame = +3
Query: 54 FKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNCFIRGSV 233
F+ L ++ + L + +I G L D NI L V S+K + + K+ IRG+
Sbjct: 8 FEKLKNESLKIVLKSHTTIIGTLQDSDILGNIVLKFAKV--SQKNKNEMIYKDLIIRGNS 65
Query: 234 VRYVQLPAD 260
VRY+ LP +
Sbjct: 66 VRYIILPVN 74
>UniRef50_Q4MZK0 Cluster: U6 snRNA-associated protein, putative;
n=1; Theileria parva|Rep: U6 snRNA-associated protein,
putative - Theileria parva
Length = 141
Score = 33.1 bits (72), Expect = 3.4
Identities = 19/73 (26%), Positives = 36/73 (49%)
Frame = +3
Query: 81 VVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQLPAD 260
++ L N + G L S D +N+ + ++ V S+ + CFIRG+ V+ ++LP +
Sbjct: 17 LIELKNGETYSGILDSCDAFMNMHMVNV-VCTSKSGTDFWKLDECFIRGNTVKSLRLPNE 75
Query: 261 EVDTQLLQDAARK 299
+ + RK
Sbjct: 76 VAEIAKEEKRPRK 88
>UniRef50_A7AWX9 Cluster: U6 snRNA-associated Sm-like protein LSm4,
putative; n=1; Babesia bovis|Rep: U6 snRNA-associated
Sm-like protein LSm4, putative - Babesia bovis
Length = 104
Score = 33.1 bits (72), Expect = 3.4
Identities = 19/59 (32%), Positives = 33/59 (55%)
Frame = +3
Query: 114 GPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDA 290
G L S D +N+ + + ++ S+K + CFIRG+ V+ + P DEV T L+++
Sbjct: 16 GILSSCDAFMNVHMIN-AICTSKKGDEFWKLSECFIRGNNVKSFRFP-DEVATVALEES 72
>UniRef50_Q4UBR6 Cluster: U6 snrna-associated sm-like protein lsm4,
putative; n=1; Theileria annulata|Rep: U6
snrna-associated sm-like protein lsm4, putative -
Theileria annulata
Length = 105
Score = 32.7 bits (71), Expect = 4.5
Identities = 19/73 (26%), Positives = 36/73 (49%)
Frame = +3
Query: 81 VVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQLPAD 260
++ L N + G L S D +N+ + ++ V S+ + CFIRG+ V+ ++LP +
Sbjct: 17 LIELKNGETYSGILDSCDAFMNMHMVNV-VCTSKSGTDFWKLDECFIRGNTVKSLRLPNE 75
Query: 261 EVDTQLLQDAARK 299
+ + RK
Sbjct: 76 VAEIAKEEKHPRK 88
>UniRef50_Q0UQD0 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 187
Score = 32.7 bits (71), Expect = 4.5
Identities = 20/80 (25%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Frame = +3
Query: 69 GXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQ 248
G ++V L + ++ G L + D +N+ L ++ V S + + ++RGS ++Y++
Sbjct: 72 GHPMLVELKSGETLNGLLVNCDTWMNLTLREV-VQTSADGDKFMRLPEIYVRGSTIKYLR 130
Query: 249 LPADEVDT---QLLQDAARK 299
+P + VD Q ++D A +
Sbjct: 131 VPDEIVDVVKDQQVKDQANR 150
>UniRef50_A0WAR4 Cluster: Putative uncharacterized protein
precursor; n=1; Geobacter lovleyi SZ|Rep: Putative
uncharacterized protein precursor - Geobacter lovleyi SZ
Length = 546
Score = 32.3 bits (70), Expect = 6.0
Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Frame = +3
Query: 6 QRVFKQTKRKMLFSSFFKSLVGXAVVVX--LXNALSI--CGPLHSVDQXLNIKLSDISVI 173
+ +F ++ R +L S+F+ ++V + L A + C S+ +++ +V
Sbjct: 202 ETIFTRSNRMLLNSTFWAAIVALTQLCLDPLVKACYVLRCHYGESLSSGADLRAQIKTVA 261
Query: 174 DSEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEATV 311
+ P +L +C I GS + P E QL Q AAR + +V
Sbjct: 262 ERATLPVLLVAFSCVICGSQPAFAAAPVVEPQQQLQQRAARLDRSV 307
>UniRef50_Q7R303 Cluster: GLP_385_20544_20344; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_385_20544_20344 - Giardia lamblia
ATCC 50803
Length = 66
Score = 32.3 bits (70), Expect = 6.0
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +3
Query: 36 MLFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHML 200
ML SL+G V + + G + + D+ NI L+D+SV D E++ +L
Sbjct: 1 MLQKEHLPSLIGSRVELIFTTGDKLTGTIEATDEYENILLADVSV-DDERFDRVL 54
>UniRef50_Q8ZVU2 Cluster: Small nuclear ribonucleoprotein homolog;
n=4; Pyrobaculum|Rep: Small nuclear ribonucleoprotein
homolog - Pyrobaculum aerophilum
Length = 144
Score = 32.3 bits (70), Expect = 6.0
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = +3
Query: 42 FSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKY 188
F + +L+G V V L N G LH+VD LNI L++ S EK+
Sbjct: 12 FVAELNNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNKAGEKF 60
>UniRef50_Q6BR90 Cluster: Similar to CA5853|CaLSM6 Candida albicans
CaLSM6; n=3; Ascomycota|Rep: Similar to CA5853|CaLSM6
Candida albicans CaLSM6 - Debaryomyces hansenii (Yeast)
(Torulaspora hansenii)
Length = 84
Score = 31.9 bits (69), Expect = 7.9
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 45 SSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSD 161
S F ++G +V V L N + G L S+D +NI L +
Sbjct: 18 SVFLSEIIGSSVTVRLHNGVEYLGNLQSIDGYMNIVLDE 56
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 340,383,413
Number of Sequences: 1657284
Number of extensions: 5676713
Number of successful extensions: 12556
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 12349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12548
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 28130105105
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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