Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_D12
         (486 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.01c |lsm2||U6 snRNP-associated protein core protein|Sch...   107   1e-24
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch...    39   3e-04
SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein Smf1|Schizosac...    27   2.0  
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo...    26   2.6  
SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f...    25   4.6  

>SPCC1620.01c |lsm2||U6 snRNP-associated protein core
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 96

 Score =  107 bits (256), Expect = 1e-24
 Identities = 54/95 (56%), Positives = 68/95 (71%)
 Frame = +3

Query: 36  MLFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNC 215
           MLF SFFK+L+   V V L N +SI G L SVDQ LN+KL +ISV+D+ KYPHM +VK+ 
Sbjct: 1   MLFYSFFKTLIDTEVTVELKNDMSIRGILKSVDQFLNVKLENISVVDASKYPHMAAVKDL 60

Query: 216 FIRGSVVRYVQLPADEVDTQLLQDAARKEATVSTR 320
           FIRGSVVRYV + +  VDT LL DA R++   + R
Sbjct: 61  FIRGSVVRYVHMSSAYVDTILLADACRRDLANNKR 95


>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
           Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 39.1 bits (87), Expect = 3e-04
 Identities = 24/97 (24%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
 Frame = +3

Query: 36  MLFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDI--SVIDSEKYPHMLSVK 209
           ML  +   +  G  ++V L N  +  G L + D  +N+ L ++  ++ D +K+     + 
Sbjct: 1   MLPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKF---FRLP 57

Query: 210 NCFIRGSVVRYVQLPADEVDTQLLQDAARKEATVSTR 320
            C+IRG+ ++Y+++  DEV +Q+ +  A++     +R
Sbjct: 58  ECYIRGNNIKYLRI-QDEVLSQVAKQQAQQRENRGSR 93


>SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein
           Smf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 78

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 51  FFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKL 155
           F + L+G  V+V L       G L SVD  +N++L
Sbjct: 11  FLQGLIGKPVLVRLKWGQEYKGTLQSVDSYMNLQL 45


>SPAC22F3.12c |rgs1||regulator of G-protein signaling
           Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 180 EKYPHMLSVKNCFIRGSVVRYVQLPAD 260
           E + H   + NCF+  +    V LP+D
Sbjct: 398 ESFAHACGIYNCFLSSNAPNAVNLPSD 424


>SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity
           factor complex subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -3

Query: 289 ASWRSWVSTSSAGSCTYRTTEPLIKQFFTDNI*GYF 182
           A+W S V  SS+G C  R  E  I+QF    I  YF
Sbjct: 280 ATWLSVVKVSSSGGCIDR-EEEWIQQFQARCIKQYF 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,449,993
Number of Sequences: 5004
Number of extensions: 25183
Number of successful extensions: 55
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)