Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_D12
         (486 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0357 + 3140610-3140612,3140742-3140900,3141027-3141068           73   2e-13
01_01_1089 - 8560008-8560220,8560456-8560977,8561095-8561283,856...    42   3e-04
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742...    29   2.6  
03_05_0952 + 29103879-29103983,29104103-29104600,29104693-291047...    28   3.5  
02_02_0603 - 12057820-12058094,12058164-12058305,12058469-120585...    27   6.0  

>08_01_0357 + 3140610-3140612,3140742-3140900,3141027-3141068
          Length = 67

 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 36/62 (58%), Positives = 43/62 (69%)
 Frame = +3

Query: 36  MLFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNC 215
           MLF S+FK LVG  V V L N L+I G LHSVDQ LNIKL +  V+D +KYPHM +   C
Sbjct: 1   MLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMQT--QC 58

Query: 216 FI 221
           F+
Sbjct: 59  FL 60


>01_01_1089 -
           8560008-8560220,8560456-8560977,8561095-8561283,
           8561377-8561642,8561967-8562111,8562411-8562530,
           8562611-8562930,8564161-8564341,8564434-8564580,
           8565186-8565497,8566303-8566450,8566592-8566765,
           8567385-8567446,8567499-8567571,8567628-8567683,
           8568370-8568645,8569541-8569588,8569870-8569991,
           8570258-8570413,8571037-8571079,8572624-8572701,
           8572972-8573070,8573168-8573209,8573302-8573304
          Length = 1264

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 24/90 (26%), Positives = 49/90 (54%)
 Frame = +3

Query: 36  MLFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNC 215
           ML  S  K+  G  ++V L N  +  G L + D  +NI L ++ +  S+       +  C
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREV-ICTSKDGDKFWRMPEC 59

Query: 216 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 305
           +IRG+ ++Y+++P DEV  ++ ++ ++  +
Sbjct: 60  YIRGNTIKYLRVP-DEVIDKVQEETSKSRS 88


>01_06_1406 - 37073548-37073822,37073892-37074111,37074200-37074246,
            37074404-37074576,37075161-37075238,37075751-37075813,
            37075889-37075961,37076150-37076189,37076302-37076368,
            37076719-37078472,37079128-37079230,37080041-37080078,
            37080221-37080347,37081944-37082152
          Length = 1088

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -3

Query: 337  G*VKFYLVETVASFLAASWRSWVSTSSAGSCTYRTTEPLIKQFFTDNI*GY 185
            G +KF  +  +A+ +  + R +V T + G  TY+ +E LI       I GY
Sbjct: 860  GTLKFVSLSRIANDVPFTGRPFVGTKTQGVSTYQLSEYLIWSVHASEITGY 910


>03_05_0952 +
           29103879-29103983,29104103-29104600,29104693-29104794,
           29105552-29105898,29105967-29106153,29106242-29106417,
           29106976-29107065,29107066-29107322,29107593-29107687,
           29107801-29107920,29108111-29108230,29108410-29108508,
           29108588-29108689,29108884-29109111
          Length = 841

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -2

Query: 155 KLYIEXLIHRMQRPTDAEGIXQXDDDSLTD*RFEKRGKQHFA 30
           +LY E L+ +M+   D EG+   D++   + + + RG++  A
Sbjct: 186 QLYSEFLLEKMETIADVEGVDTPDEEEPVEEKKKGRGRKRKA 227


>02_02_0603 -
           12057820-12058094,12058164-12058305,12058469-12058515,
           12058678-12058850,12059408-12059485,12059998-12060060,
           12060135-12060207,12061989-12062377,12063225-12063304
          Length = 439

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -3

Query: 337 G*VKFYLVETVASFLAASWRSWVSTSSAGSCTYRTTEPLIKQFFTDNI*GY 185
           G +KF  +  +A+ +  + R +V T + G  TY+  E LI       I GY
Sbjct: 237 GALKFVSLLRIANDVPVTGRPFVGTKTQGVSTYQLPEYLIWSVHASEITGY 287


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,940,387
Number of Sequences: 37544
Number of extensions: 150158
Number of successful extensions: 337
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)