Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_D12
(486 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR542157-1|CAG46954.1| 95|Homo sapiens LSM2 protein. 158 8e-39
CR542146-1|CAG46943.1| 95|Homo sapiens LSM2 protein. 158 8e-39
BC009192-1|AAH09192.1| 95|Homo sapiens LSM2 homolog, U6 small ... 158 8e-39
BA000025-11|BAB63302.1| 95|Homo sapiens small nuclear ribonucl... 158 8e-39
AL929592-3|CAI18462.1| 95|Homo sapiens LSM2 homolog, U6 small ... 158 8e-39
AL671762-3|CAI18212.1| 95|Homo sapiens LSM2 homolog, U6 small ... 158 8e-39
AL662834-14|CAI17733.1| 95|Homo sapiens LSM2 homolog, U6 small... 158 8e-39
AJ245416-1|CAB52190.1| 95|Homo sapiens G7b protein protein. 158 8e-39
AF196468-1|AAG33023.1| 95|Homo sapiens SMX5-like protein protein. 158 8e-39
AF182288-1|AAD56226.1| 95|Homo sapiens U6 snRNA-associated Sm-... 158 8e-39
AF136977-1|AAG49438.1| 95|Homo sapiens snRNP core SM-like prot... 158 8e-39
AF134726-9|AAD21818.1| 95|Homo sapiens snRNP protein. 158 8e-39
BC023665-1|AAH23665.1| 139|Homo sapiens LSM4 homolog, U6 small ... 42 0.002
BC022198-1|AAH22198.1| 139|Homo sapiens LSM4 homolog, U6 small ... 42 0.002
BC003652-1|AAH03652.1| 139|Homo sapiens LSM4 homolog, U6 small ... 42 0.002
BC000387-1|AAH00387.1| 139|Homo sapiens LSM4 homolog, U6 small ... 42 0.002
AJ238096-1|CAB45867.1| 139|Homo sapiens Lsm4 protein protein. 42 0.002
AF251218-1|AAF90055.1| 139|Homo sapiens LSm4 autoantigen protein. 42 0.002
AF182290-1|AAD56228.1| 139|Homo sapiens U6 snRNA-associated Sm-... 42 0.002
AF117235-1|AAF17216.1| 139|Homo sapiens glycine-rich protein pr... 42 0.002
BC016026-1|AAH16026.1| 80|Homo sapiens LSM6 homolog, U6 small ... 34 0.31
AJ238098-1|CAB45869.1| 80|Homo sapiens Lsm6 protein protein. 34 0.31
AF182292-1|AAD56230.1| 80|Homo sapiens U6 snRNA-associated Sm-... 34 0.31
AC097372-1|AAY41032.1| 80|Homo sapiens unknown protein. 34 0.31
>CR542157-1|CAG46954.1| 95|Homo sapiens LSM2 protein.
Length = 95
Score = 158 bits (384), Expect = 8e-39
Identities = 79/90 (87%), Positives = 80/90 (88%)
Frame = +3
Query: 36 MLFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNC 215
MLF SFFKSLVG VVV L N LSICG LHSVDQ LNIKL+DISV D EKYPHMLSVKNC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 216 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 305
FIRGSVVRYVQLPADEVDTQLLQDAARKEA
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 90
>CR542146-1|CAG46943.1| 95|Homo sapiens LSM2 protein.
Length = 95
Score = 158 bits (384), Expect = 8e-39
Identities = 79/90 (87%), Positives = 80/90 (88%)
Frame = +3
Query: 36 MLFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNC 215
MLF SFFKSLVG VVV L N LSICG LHSVDQ LNIKL+DISV D EKYPHMLSVKNC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 216 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 305
FIRGSVVRYVQLPADEVDTQLLQDAARKEA
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 90
>BC009192-1|AAH09192.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 95
Score = 158 bits (384), Expect = 8e-39
Identities = 79/90 (87%), Positives = 80/90 (88%)
Frame = +3
Query: 36 MLFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNC 215
MLF SFFKSLVG VVV L N LSICG LHSVDQ LNIKL+DISV D EKYPHMLSVKNC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 216 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 305
FIRGSVVRYVQLPADEVDTQLLQDAARKEA
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 90
>BA000025-11|BAB63302.1| 95|Homo sapiens small nuclear ribonuclear
protein D homolog protein.
Length = 95
Score = 158 bits (384), Expect = 8e-39
Identities = 79/90 (87%), Positives = 80/90 (88%)
Frame = +3
Query: 36 MLFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNC 215
MLF SFFKSLVG VVV L N LSICG LHSVDQ LNIKL+DISV D EKYPHMLSVKNC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 216 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 305
FIRGSVVRYVQLPADEVDTQLLQDAARKEA
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 90
>AL929592-3|CAI18462.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S.ta 2 protein.
Length = 95
Score = 158 bits (384), Expect = 8e-39
Identities = 79/90 (87%), Positives = 80/90 (88%)
Frame = +3
Query: 36 MLFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNC 215
MLF SFFKSLVG VVV L N LSICG LHSVDQ LNIKL+DISV D EKYPHMLSVKNC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 216 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 305
FIRGSVVRYVQLPADEVDTQLLQDAARKEA
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 90
>AL671762-3|CAI18212.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S.ta 2 protein.
Length = 95
Score = 158 bits (384), Expect = 8e-39
Identities = 79/90 (87%), Positives = 80/90 (88%)
Frame = +3
Query: 36 MLFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNC 215
MLF SFFKSLVG VVV L N LSICG LHSVDQ LNIKL+DISV D EKYPHMLSVKNC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 216 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 305
FIRGSVVRYVQLPADEVDTQLLQDAARKEA
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 90
>AL662834-14|CAI17733.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S.pha 3 (pseudogene) protein.
Length = 95
Score = 158 bits (384), Expect = 8e-39
Identities = 79/90 (87%), Positives = 80/90 (88%)
Frame = +3
Query: 36 MLFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNC 215
MLF SFFKSLVG VVV L N LSICG LHSVDQ LNIKL+DISV D EKYPHMLSVKNC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 216 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 305
FIRGSVVRYVQLPADEVDTQLLQDAARKEA
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 90
>AJ245416-1|CAB52190.1| 95|Homo sapiens G7b protein protein.
Length = 95
Score = 158 bits (384), Expect = 8e-39
Identities = 79/90 (87%), Positives = 80/90 (88%)
Frame = +3
Query: 36 MLFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNC 215
MLF SFFKSLVG VVV L N LSICG LHSVDQ LNIKL+DISV D EKYPHMLSVKNC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 216 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 305
FIRGSVVRYVQLPADEVDTQLLQDAARKEA
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 90
>AF196468-1|AAG33023.1| 95|Homo sapiens SMX5-like protein protein.
Length = 95
Score = 158 bits (384), Expect = 8e-39
Identities = 79/90 (87%), Positives = 80/90 (88%)
Frame = +3
Query: 36 MLFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNC 215
MLF SFFKSLVG VVV L N LSICG LHSVDQ LNIKL+DISV D EKYPHMLSVKNC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 216 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 305
FIRGSVVRYVQLPADEVDTQLLQDAARKEA
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 90
>AF182288-1|AAD56226.1| 95|Homo sapiens U6 snRNA-associated
Sm-like protein LSm2 protein.
Length = 95
Score = 158 bits (384), Expect = 8e-39
Identities = 79/90 (87%), Positives = 80/90 (88%)
Frame = +3
Query: 36 MLFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNC 215
MLF SFFKSLVG VVV L N LSICG LHSVDQ LNIKL+DISV D EKYPHMLSVKNC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 216 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 305
FIRGSVVRYVQLPADEVDTQLLQDAARKEA
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 90
>AF136977-1|AAG49438.1| 95|Homo sapiens snRNP core SM-like protein
SM-x5 protein.
Length = 95
Score = 158 bits (384), Expect = 8e-39
Identities = 79/90 (87%), Positives = 80/90 (88%)
Frame = +3
Query: 36 MLFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNC 215
MLF SFFKSLVG VVV L N LSICG LHSVDQ LNIKL+DISV D EKYPHMLSVKNC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 216 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 305
FIRGSVVRYVQLPADEVDTQLLQDAARKEA
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 90
>AF134726-9|AAD21818.1| 95|Homo sapiens snRNP protein.
Length = 95
Score = 158 bits (384), Expect = 8e-39
Identities = 79/90 (87%), Positives = 80/90 (88%)
Frame = +3
Query: 36 MLFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNC 215
MLF SFFKSLVG VVV L N LSICG LHSVDQ LNIKL+DISV D EKYPHMLSVKNC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 216 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 305
FIRGSVVRYVQLPADEVDTQLLQDAARKEA
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 90
>BC023665-1|AAH23665.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 41.5 bits (93), Expect = 0.002
Identities = 23/78 (29%), Positives = 40/78 (51%)
Frame = +3
Query: 36 MLFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNC 215
ML S K+ ++V L N + G L S D +NI L ++ + S + C
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREV-ICTSRDGDKFWRMPEC 59
Query: 216 FIRGSVVRYVQLPADEVD 269
+IRGS ++Y+++P + +D
Sbjct: 60 YIRGSTIKYLRIPDEIID 77
>BC022198-1|AAH22198.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 41.5 bits (93), Expect = 0.002
Identities = 23/78 (29%), Positives = 40/78 (51%)
Frame = +3
Query: 36 MLFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNC 215
ML S K+ ++V L N + G L S D +NI L ++ + S + C
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREV-ICTSRDGDKFWRMPEC 59
Query: 216 FIRGSVVRYVQLPADEVD 269
+IRGS ++Y+++P + +D
Sbjct: 60 YIRGSTIKYLRIPDEIID 77
>BC003652-1|AAH03652.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 41.5 bits (93), Expect = 0.002
Identities = 23/78 (29%), Positives = 40/78 (51%)
Frame = +3
Query: 36 MLFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNC 215
ML S K+ ++V L N + G L S D +NI L ++ + S + C
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREV-ICTSRDGDKFWRMPEC 59
Query: 216 FIRGSVVRYVQLPADEVD 269
+IRGS ++Y+++P + +D
Sbjct: 60 YIRGSTIKYLRIPDEIID 77
>BC000387-1|AAH00387.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 41.5 bits (93), Expect = 0.002
Identities = 23/78 (29%), Positives = 40/78 (51%)
Frame = +3
Query: 36 MLFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNC 215
ML S K+ ++V L N + G L S D +NI L ++ + S + C
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREV-ICTSRDGDKFWRMPEC 59
Query: 216 FIRGSVVRYVQLPADEVD 269
+IRGS ++Y+++P + +D
Sbjct: 60 YIRGSTIKYLRIPDEIID 77
>AJ238096-1|CAB45867.1| 139|Homo sapiens Lsm4 protein protein.
Length = 139
Score = 41.5 bits (93), Expect = 0.002
Identities = 23/78 (29%), Positives = 40/78 (51%)
Frame = +3
Query: 36 MLFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNC 215
ML S K+ ++V L N + G L S D +NI L ++ + S + C
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREV-ICTSRDGDKFWRMPEC 59
Query: 216 FIRGSVVRYVQLPADEVD 269
+IRGS ++Y+++P + +D
Sbjct: 60 YIRGSTIKYLRIPDEIID 77
>AF251218-1|AAF90055.1| 139|Homo sapiens LSm4 autoantigen protein.
Length = 139
Score = 41.5 bits (93), Expect = 0.002
Identities = 23/78 (29%), Positives = 40/78 (51%)
Frame = +3
Query: 36 MLFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNC 215
ML S K+ ++V L N + G L S D +NI L ++ + S + C
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREV-ICTSRDGDKFWRMPEC 59
Query: 216 FIRGSVVRYVQLPADEVD 269
+IRGS ++Y+++P + +D
Sbjct: 60 YIRGSTIKYLRIPDEIID 77
>AF182290-1|AAD56228.1| 139|Homo sapiens U6 snRNA-associated
Sm-like protein LSm4 protein.
Length = 139
Score = 41.5 bits (93), Expect = 0.002
Identities = 23/78 (29%), Positives = 40/78 (51%)
Frame = +3
Query: 36 MLFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNC 215
ML S K+ ++V L N + G L S D +NI L ++ + S + C
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREV-ICTSRDGDKFWRMPEC 59
Query: 216 FIRGSVVRYVQLPADEVD 269
+IRGS ++Y+++P + +D
Sbjct: 60 YIRGSTIKYLRIPDEIID 77
>AF117235-1|AAF17216.1| 139|Homo sapiens glycine-rich protein
protein.
Length = 139
Score = 41.5 bits (93), Expect = 0.002
Identities = 23/78 (29%), Positives = 40/78 (51%)
Frame = +3
Query: 36 MLFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNC 215
ML S K+ ++V L N + G L S D +NI L ++ + S + C
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREV-ICTSRDGDKFWRMPEC 59
Query: 216 FIRGSVVRYVQLPADEVD 269
+IRGS ++Y+++P + +D
Sbjct: 60 YIRGSTIKYLRIPDEIID 77
>BC016026-1|AAH16026.1| 80|Homo sapiens LSM6 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 80
Score = 33.9 bits (74), Expect = 0.31
Identities = 22/72 (30%), Positives = 34/72 (47%)
Frame = +3
Query: 30 RKMLFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVK 209
RK S F K ++G VVV L + + G L +D +NI L + + +
Sbjct: 4 RKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG-- 61
Query: 210 NCFIRGSVVRYV 245
+ FIRG+ V Y+
Sbjct: 62 DAFIRGNNVLYI 73
>AJ238098-1|CAB45869.1| 80|Homo sapiens Lsm6 protein protein.
Length = 80
Score = 33.9 bits (74), Expect = 0.31
Identities = 22/72 (30%), Positives = 34/72 (47%)
Frame = +3
Query: 30 RKMLFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVK 209
RK S F K ++G VVV L + + G L +D +NI L + + +
Sbjct: 4 RKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG-- 61
Query: 210 NCFIRGSVVRYV 245
+ FIRG+ V Y+
Sbjct: 62 DAFIRGNNVLYI 73
>AF182292-1|AAD56230.1| 80|Homo sapiens U6 snRNA-associated
Sm-like protein LSm6 protein.
Length = 80
Score = 33.9 bits (74), Expect = 0.31
Identities = 22/72 (30%), Positives = 34/72 (47%)
Frame = +3
Query: 30 RKMLFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVK 209
RK S F K ++G VVV L + + G L +D +NI L + + +
Sbjct: 4 RKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG-- 61
Query: 210 NCFIRGSVVRYV 245
+ FIRG+ V Y+
Sbjct: 62 DAFIRGNNVLYI 73
>AC097372-1|AAY41032.1| 80|Homo sapiens unknown protein.
Length = 80
Score = 33.9 bits (74), Expect = 0.31
Identities = 22/72 (30%), Positives = 34/72 (47%)
Frame = +3
Query: 30 RKMLFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVK 209
RK S F K ++G VVV L + + G L +D +NI L + + +
Sbjct: 4 RKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG-- 61
Query: 210 NCFIRGSVVRYV 245
+ FIRG+ V Y+
Sbjct: 62 DAFIRGNNVLYI 73
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,884,403
Number of Sequences: 237096
Number of extensions: 795581
Number of successful extensions: 1307
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1307
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4384610846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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