Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_D12
(486 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81118-7|CAB03328.3| 97|Caenorhabditis elegans Hypothetical pr... 142 1e-34
U20864-9|AAC46661.1| 123|Caenorhabditis elegans Lsm sm-like pro... 40 0.001
AC025726-13|AAK73913.1| 77|Caenorhabditis elegans Lsm sm-like ... 31 0.44
Z83117-6|CAN86902.1| 1931|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z83117-5|CAN86901.1| 1971|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z83117-4|CAB05572.2| 2032|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z80219-10|CAN86596.1| 1931|Caenorhabditis elegans Hypothetical p... 27 7.2
Z80219-9|CAN86595.1| 1971|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z80219-8|CAB02303.2| 2032|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z71264-3|CAA95827.1| 325|Caenorhabditis elegans Hypothetical pr... 27 7.2
AJ276020-1|CAC81668.1| 1971|Caenorhabditis elegans putative TRP ... 27 7.2
AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical... 27 9.5
AC006708-18|AAF60424.2| 450|Caenorhabditis elegans Hypothetical... 27 9.5
AC006708-17|AAK68884.2| 435|Caenorhabditis elegans Hypothetical... 27 9.5
>Z81118-7|CAB03328.3| 97|Caenorhabditis elegans Hypothetical
protein T10G3.6 protein.
Length = 97
Score = 142 bits (344), Expect = 1e-34
Identities = 68/89 (76%), Positives = 77/89 (86%)
Frame = +3
Query: 36 MLFSSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNC 215
MLF SFFKSLVG VVV L N LSICG LHSVDQ LN+KL+DI+V D E++PHM+SVKNC
Sbjct: 1 MLFFSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNMKLTDITVSDPERFPHMVSVKNC 60
Query: 216 FIRGSVVRYVQLPADEVDTQLLQDAARKE 302
FIRGSVVRYVQLP+D+VDTQLL D+ RKE
Sbjct: 61 FIRGSVVRYVQLPSDQVDTQLLADSCRKE 89
>U20864-9|AAC46661.1| 123|Caenorhabditis elegans Lsm sm-like
protein protein 4 protein.
Length = 123
Score = 39.5 bits (88), Expect = 0.001
Identities = 20/74 (27%), Positives = 37/74 (50%)
Frame = +3
Query: 48 SFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNCFIRG 227
S K+ ++V L N + G L + D +NI L D+ + S+ + ++RG
Sbjct: 6 SLLKTAQNHPMLVELKNGETYNGHLKACDSWMNIHLVDV-IFTSKDGDKFFKMSEAYVRG 64
Query: 228 SVVRYVQLPADEVD 269
S ++Y+++P VD
Sbjct: 65 STIKYLRIPETVVD 78
>AC025726-13|AAK73913.1| 77|Caenorhabditis elegans Lsm sm-like
protein protein 6 protein.
Length = 77
Score = 31.1 bits (67), Expect = 0.44
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = +3
Query: 45 SSFFKSLVGXAVVVXLXNALSICGPLHSVDQXLNIKLSDISVIDSEKYPHMLSVKNCFIR 224
+ F K ++G VVV L + + G L +D +NI L + + + + FIR
Sbjct: 8 AEFLKKVIGKPVVVKLNSGVDYRGILACLDGYMNIALEQTEEYSNGQLQNKYG--DAFIR 65
Query: 225 GSVVRYV 245
G+ V Y+
Sbjct: 66 GNNVLYI 72
>Z83117-6|CAN86902.1| 1931|Caenorhabditis elegans Hypothetical protein
T01H8.5d protein.
Length = 1931
Score = 27.1 bits (57), Expect = 7.2
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +3
Query: 141 LNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQLPADEVDT 272
L+ L+ S+ ++ H + V+N F++ + Y ++ ADE+DT
Sbjct: 1354 LSFGLARQSITYPDETWHWILVRNIFLKPYFMLYGEVYADEIDT 1397
>Z83117-5|CAN86901.1| 1971|Caenorhabditis elegans Hypothetical protein
T01H8.5c protein.
Length = 1971
Score = 27.1 bits (57), Expect = 7.2
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +3
Query: 141 LNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQLPADEVDT 272
L+ L+ S+ ++ H + V+N F++ + Y ++ ADE+DT
Sbjct: 1394 LSFGLARQSITYPDETWHWILVRNIFLKPYFMLYGEVYADEIDT 1437
>Z83117-4|CAB05572.2| 2032|Caenorhabditis elegans Hypothetical protein
T01H8.5a protein.
Length = 2032
Score = 27.1 bits (57), Expect = 7.2
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +3
Query: 141 LNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQLPADEVDT 272
L+ L+ S+ ++ H + V+N F++ + Y ++ ADE+DT
Sbjct: 1455 LSFGLARQSITYPDETWHWILVRNIFLKPYFMLYGEVYADEIDT 1498
>Z80219-10|CAN86596.1| 1931|Caenorhabditis elegans Hypothetical
protein T01H8.5d protein.
Length = 1931
Score = 27.1 bits (57), Expect = 7.2
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +3
Query: 141 LNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQLPADEVDT 272
L+ L+ S+ ++ H + V+N F++ + Y ++ ADE+DT
Sbjct: 1354 LSFGLARQSITYPDETWHWILVRNIFLKPYFMLYGEVYADEIDT 1397
>Z80219-9|CAN86595.1| 1971|Caenorhabditis elegans Hypothetical protein
T01H8.5c protein.
Length = 1971
Score = 27.1 bits (57), Expect = 7.2
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +3
Query: 141 LNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQLPADEVDT 272
L+ L+ S+ ++ H + V+N F++ + Y ++ ADE+DT
Sbjct: 1394 LSFGLARQSITYPDETWHWILVRNIFLKPYFMLYGEVYADEIDT 1437
>Z80219-8|CAB02303.2| 2032|Caenorhabditis elegans Hypothetical protein
T01H8.5a protein.
Length = 2032
Score = 27.1 bits (57), Expect = 7.2
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +3
Query: 141 LNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQLPADEVDT 272
L+ L+ S+ ++ H + V+N F++ + Y ++ ADE+DT
Sbjct: 1455 LSFGLARQSITYPDETWHWILVRNIFLKPYFMLYGEVYADEIDT 1498
>Z71264-3|CAA95827.1| 325|Caenorhabditis elegans Hypothetical
protein K07G5.4 protein.
Length = 325
Score = 27.1 bits (57), Expect = 7.2
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = -1
Query: 279 EAGCLPHQPAVVRIE--PRSLL*NNFSLITYEDTF 181
EA P +P++ R E PRS+L N+ S YE+ +
Sbjct: 225 EASPPPPRPSITRTESVPRSILKNSSSFAIYEEIY 259
>AJ276020-1|CAC81668.1| 1971|Caenorhabditis elegans putative TRP
homologous cationchannel protein.
Length = 1971
Score = 27.1 bits (57), Expect = 7.2
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +3
Query: 141 LNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQLPADEVDT 272
L+ L+ S+ ++ H + V+N F++ + Y ++ ADE+DT
Sbjct: 1394 LSFGLARQSITYPDETWHWILVRNIFLKPYFMLYGEVYADEIDT 1437
>AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical
protein Y66D12A.14 protein.
Length = 2870
Score = 26.6 bits (56), Expect = 9.5
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -1
Query: 273 GCLPHQPAVVRIEPRSLL*NNFSLITYE--DTFQSQSRLY 160
GCLP+ V ++ R L NF L+ E DT ++LY
Sbjct: 2670 GCLPYHKMVEELKKRFLGKTNFILLDEEFGDTVDEVAKLY 2709
>AC006708-18|AAF60424.2| 450|Caenorhabditis elegans Hypothetical
protein Y110A7A.6a protein.
Length = 450
Score = 26.6 bits (56), Expect = 9.5
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -2
Query: 311 NGRLLSSGILEKLGVYLISRQLYVSNHGAS 222
NG + S + + ++L+ R +Y+S HG S
Sbjct: 228 NGHVQSRVVYFLMNIHLLPRSIYLSRHGES 257
>AC006708-17|AAK68884.2| 435|Caenorhabditis elegans Hypothetical
protein Y110A7A.6b protein.
Length = 435
Score = 26.6 bits (56), Expect = 9.5
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -2
Query: 311 NGRLLSSGILEKLGVYLISRQLYVSNHGAS 222
NG + S + + ++L+ R +Y+S HG S
Sbjct: 234 NGHVQSRVVYFLMNIHLLPRSIYLSRHGES 263
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,989,883
Number of Sequences: 27780
Number of extensions: 139516
Number of successful extensions: 315
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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