Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_D12
         (486 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   3.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.0  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   5.3  
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           21   9.2  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 128 RMQRPTDAEGIXQXDDDSLTD*RFEKRGK 42
           R +R  D EG    DDD   +   + RG+
Sbjct: 267 RKRRQNDGEGADDRDDDEENEEEEDGRGQ 295


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 192 HMLSVKNCFIRGSVVRYVQLPADEVD 269
           H LS+  CF+R   V+      DEV+
Sbjct: 554 HNLSLHKCFMRVENVKGAVWTVDEVE 579


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 91  SXTTTAXPTNDLKNEENN 38
           S T++  P N  KN+ NN
Sbjct: 104 SSTSSNDPKNQYKNQNNN 121


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -2

Query: 296 SSGILEKLGVYLIS 255
           ++ ++EKLG YL+S
Sbjct: 110 AASVVEKLGDYLVS 123


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,575
Number of Sequences: 438
Number of extensions: 1613
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)