Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_D09
(808 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyc... 202 5e-53
SPBC3H7.04 |||mitochondrial ribosomal protein subunit S26|Schizo... 57 3e-09
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz... 41 2e-04
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa... 30 0.44
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 29 0.78
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 27 3.1
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 26 5.5
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 26 7.2
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 7.2
>SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 218
Score = 202 bits (493), Expect = 5e-53
Identities = 99/204 (48%), Positives = 131/204 (64%), Gaps = 5/204 (2%)
Frame = +1
Query: 142 VAGASRQQHTLPXLPYXYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAKGD 321
+A + TLP LPY YNALEP +S IM LHH KHH TY+NNLN A+EKLA D
Sbjct: 18 IARGVHTKATLPPLPYAYNALEPALSETIMKLHHDKHHQTYVNNLNAAQEKLADPNL--D 75
Query: 322 IDTIINLAPALKFNGGGHINHSIFWHNLSP---NGGKP--SDVLTKAVEKDFGSWDNLKN 486
++ + L A+KFNGGGHINHS+FW L+P GGKP S L KA+ +GS ++ +
Sbjct: 76 LEGEVALQAAIKFNGGGHINHSLFWKILAPQKEGGGKPVTSGSLHKAITSKWGSLEDFQK 135
Query: 487 QLSTASVAVQGSGWGWLGYNKQMKKLQIATCQNQDPLQATTGLVPLFGIDVWEHAYYLQY 666
+++ A ++QGSGW WL +K L+I T NQD + + P+ GID WEHAYY QY
Sbjct: 136 EMNAALASIQGSGWAWLIVDKD-GSLRITTTANQDTIVKSK---PIIGIDAWEHAYYPQY 191
Query: 667 KNVRADYVKAIFDVXNWNDISXRY 738
+N +A+Y KAI++V NW + RY
Sbjct: 192 ENRKAEYFKAIWNVINWKEAESRY 215
>SPBC3H7.04 |||mitochondrial ribosomal protein subunit
S26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 220
Score = 56.8 bits (131), Expect = 3e-09
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 16/138 (11%)
Frame = +1
Query: 376 INHSIFWHNL-SPNG-GKPSDV----LTKAVEKDFGSWDNLKNQLSTASVAVQGSGWGWL 537
+NH F+ L SP +D+ L ++ FGS+ LK+Q+ +V G GW WL
Sbjct: 76 VNHDFFFSGLISPERPSADADLGAINLKPGIDASFGSFGELKSQMVDVGNSVFGDGWLWL 135
Query: 538 GYNKQMKKLQIATCQNQD---------PLQATTGLVPLFGIDVWEHAYYLQY-KNVRADY 687
Y+ + + N P T +VPL +++W++AY Y N + Y
Sbjct: 136 VYSPEKSLFSLLCTYNASNAFLWGTGFPKFRTNAIVPLLCVNLWQYAYLDDYGLNGKKMY 195
Query: 688 VKAIFDVXNWNDISXRYE 741
+ +D+ NW ++ R++
Sbjct: 196 ITKWWDMINWTVVNNRFQ 213
>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
S26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 277
Score = 41.1 bits (92), Expect = 2e-04
Identities = 54/231 (23%), Positives = 93/231 (40%), Gaps = 36/231 (15%)
Frame = +1
Query: 166 HTLPXLPYXYNALEPVISREIMSLHHSKHHATYINNLN--VAEEKLAQAQAKGDIDTIIN 339
HT+P L N L P+ S E + + +H + LN V +L + I
Sbjct: 39 HTVPNLSQR-NLL-PLFSPEALDIAWDQHQRQVVKELNDRVKGTELEDSSVFNIIFQTAA 96
Query: 340 L---APALKFNGGGHINHSIFWHNLSPNGG--------KPSDVLTKAVEKDFGSWDNLKN 486
L A +F + NH F + + + + KAV ++FGS +NL +
Sbjct: 97 LPEHAATFQFASQAYNNHFFFQSLIGKRAADAKKNSKYEANAAINKAVNENFGSKENLLS 156
Query: 487 QLSTASVAVQGSGWGWL---GYNKQ--MKKLQIAT------CQNQDPLQATT-------- 609
++ + G+ W W+ YN+ ++ Q + Q+ DP ++
Sbjct: 157 KIHELASNSFGACWLWIVIDDYNRLNLLRTFQAGSPYLWTRWQSNDPHLISSVPDYSARP 216
Query: 610 ---GLVPLFGIDVWEHAYYLQYKNV-RADYVKAIFDVXNWNDISXRYEKAL 750
VP+ + +W HAYY Y + R+ Y+ FD +W+ I R +L
Sbjct: 217 RKYAHVPILNLCLWNHAYYKDYGLLNRSRYIDTWFDCIDWSVIEERLTNSL 267
>SPBC12C2.04 |||NAD binding dehydrogenase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 29.9 bits (64), Expect = 0.44
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +1
Query: 247 KHHATYINNLNVAEEKLAQAQAKGDIDTIINLAPAL-KFNGGGHINHSIFWHNLSPNGG 420
K+HA K+ QA K D +N+A + ++N N+ +FW +S +GG
Sbjct: 157 KYHAIISIGYMFRYLKIVQAAKKYVADNNLNIACTIARYNSAYEHNNKLFWWYMSKSGG 215
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 29.1 bits (62), Expect = 0.78
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -2
Query: 690 HVVGTNVLVLKIVRVLPYIDSEERDQSSGGLQRIL 586
H +V ++K + +P +D+EER + GLQ I+
Sbjct: 409 HTYVRSVEIIKNIAEMPTVDAEERSRIFAGLQHII 443
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 27.1 bits (57), Expect = 3.1
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 580 QNQDPLQATTGLVPLFGIDVW 642
++ DPL+AT+ +PLF + W
Sbjct: 2142 KHTDPLRATSDFIPLFSMQRW 2162
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 26.2 bits (55), Expect = 5.5
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = +2
Query: 599 RPPLDWSRSSESMYGSTR 652
+PPL WS SS +++G+++
Sbjct: 101 KPPLTWSPSSANLFGTSK 118
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 345 CKVDNGVDITFSLCLCEFLFSNV 277
C VD+ +I+ SLC EF+ S V
Sbjct: 452 CLVDSFENISHSLCTTEFILSRV 474
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -2
Query: 267 DISRVMFAVMKTHDFTANDRLQCIVXVRK 181
D V+F+ KT ANDRLQCI+ ++
Sbjct: 3138 DQQNVLFSKTKT----ANDRLQCIIQTKQ 3162
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,080,389
Number of Sequences: 5004
Number of extensions: 65293
Number of successful extensions: 174
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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