Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_D09
(808 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0512 + 14913356-14913769,14915907-14916032,14916129-149161... 144 1e-34
06_01_0314 + 2255908-2255979,2256354-2256512,2257021-2257209,225... 107 8e-24
06_01_0109 - 863806-864045,864448-864566,864680-864851,864914-86... 75 7e-14
12_02_0659 - 21612325-21612328,21613164-21613199,21613279-216133... 30 1.9
01_06_0405 + 29103723-29103839,29103928-29104012,29104572-291046... 30 2.5
05_01_0355 - 2774217-2774318,2774608-2774775,2774872-2775090,277... 29 4.4
12_01_0485 - 3848721-3849227,3852019-3852369 29 5.8
06_01_0286 - 2094920-2097805 29 5.8
>05_03_0512 +
14913356-14913769,14915907-14916032,14916129-14916185,
14916950-14917027,14917681-14917773
Length = 255
Score = 144 bits (348), Expect = 1e-34
Identities = 91/221 (41%), Positives = 111/221 (50%), Gaps = 29/221 (13%)
Frame = +1
Query: 172 LPXLPYXYNALEPVISREIMSLHHSKHH----ATYINNLNVAEEKLAQAQAKG--DIDTI 333
LP LPY Y ALEP IS EIM LHH KHH A Y L + +A+ A + +
Sbjct: 33 LPDLPYDYGALEPAISGEIMRLHHQKHHATYVANYNKALEQLDAAVAKGDAPAIVHLQSA 92
Query: 334 INL--------APALKFNGGGHINHSIFW------------HNLSPNGG--KPSDVLTKA 447
I P F G ++ F L GG P L A
Sbjct: 93 IKFNGGGEAKSRPPYPFLAYGFLSFFFFVLFIAGDAGGGGSEELGGEGGGDPPHAKLGWA 152
Query: 448 VEKDFGSWDNLKNQLSTASVAVQGSGWGWLGYNKQMKKLQIATCQNQDPLQAT-TGLVPL 624
+++DFGS++ L ++S A+QGSGW WL +K+ KKL + T NQDPL LVPL
Sbjct: 153 IDEDFGSFEALVKKMSAEGAALQGSGWVWLALDKEAKKLSVETTANQDPLVTKGANLVPL 212
Query: 625 FGIDVWEHAYYLQYKNVRADYVKAIFDVXNWNDISXRYEKA 747
GIDVWEHAYYLQYKNVR DY+ I+ V NW YE A
Sbjct: 213 LGIDVWEHAYYLQYKNVRPDYLSNIWKVMNWKYAGEVYENA 253
>06_01_0314 +
2255908-2255979,2256354-2256512,2257021-2257209,
2257390-2257561,2257711-2257784,2257818-2257904,
2257975-2257998,2258100-2258225
Length = 300
Score = 107 bits (258), Expect = 8e-24
Identities = 68/225 (30%), Positives = 111/225 (49%), Gaps = 28/225 (12%)
Frame = +1
Query: 157 RQQHTLPXLPYXYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAKG-DIDTI 333
RQ L + +ALEP IS+ + LH KH Y+++LN ++LA + G ++ +
Sbjct: 65 RQDRFSMLLVFTTDALEPYISKRTVELHWGKHQQDYVDSLN---KQLATSMFYGYTLEEL 121
Query: 334 INLA-----PALKFNGGGHI-NHSIFWHNLSPNGG-KPSDVLTKAVEKDFGSWDNLKNQL 492
I A P ++N + NH FW ++ P GG P + + +EKDFGS+ N + +
Sbjct: 122 IKEAYNNGNPLPEYNNAAQVWNHHFFWESMQPEGGGSPGRGVLQQIEKDFGSFTNFREEF 181
Query: 493 STASVAVQGSGWGWLGYNKQMKKLQIATCQNQ-------------------DPLQATTGL 615
+++++ GSGW WL ++ +K + QN D + L
Sbjct: 182 IRSALSLLGSGWVWLVLKRKERKFSVVHTQNAISPLALGDINNSIPSINLCDDIPCPLLL 241
Query: 616 VPLFGIDVWEHAYYLQYKNVRADYVKAIFD-VXNWNDISXRYEKA 747
PL +D+WEHAYYL YK+ R YV D + +W+ ++ R +A
Sbjct: 242 QPLINLDLWEHAYYLDYKDDRRMYVTNFIDHLVSWDTVTLRMMRA 286
>06_01_0109 -
863806-864045,864448-864566,864680-864851,864914-865108,
865179-865388,865738-865926
Length = 374
Score = 74.9 bits (176), Expect = 7e-14
Identities = 56/199 (28%), Positives = 92/199 (46%), Gaps = 9/199 (4%)
Frame = +1
Query: 181 LPYXYNALEPVISREIMSLHHSKHHATYINNLNV----AE-EKLAQAQAKGDIDTIINLA 345
LPY +ALEP IS+E + H H ++ LN +E E ++ Q A
Sbjct: 129 LPYPSDALEPYISKETVEQHWGVHQNIHVERLNGMIGGSEWEGMSLGQMMLSSFNEGREA 188
Query: 346 PALKFNGGGHI-NHSIFWHNLSPNGG-KPSDVLTKAVEKDFGSWDNLKNQLSTASVAVQG 519
P F I NH +W ++ P GG KP + L K + +DFGS+D + Q A+ G
Sbjct: 189 PHPPFFHAAQIWNHDFYWRSMQPGGGGKPPERLLKFINRDFGSYDGMIRQFMDAASTQFG 248
Query: 520 SGWGWLGYNKQMKKLQIATCQNQDPLQATT-GLVPLFGIDVWEHAYYLQYKNVRADYVKA 696
SGW WL Y K ++ +++ P+ + G + + + + + R+DYV
Sbjct: 249 SGWVWLCY----KTSKLPHVKSRSPIPSDNYGRLVISKSPNAINPLVWGHSDRRSDYVST 304
Query: 697 IFD-VXNWNDISXRYEKAL 750
+ + +W + R +KA+
Sbjct: 305 FLEKLVSWETVESRLKKAV 323
>12_02_0659 -
21612325-21612328,21613164-21613199,21613279-21613394,
21613983-21614567
Length = 246
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -2
Query: 648 VLPYIDSEERDQSSGGLQRILVLACSYLQFLH 553
+ PY + EE D +SG ++ VL C +LQF H
Sbjct: 53 IFPYYEHEEIDSASGEKKK--VLPCYFLQFQH 82
>01_06_0405 +
29103723-29103839,29103928-29104012,29104572-29104674,
29104798-29104882,29105414-29105497,29105627-29105730,
29106522-29106783,29106978-29107414,29107637-29107718,
29109913-29110089,29110640-29110732,29110812-29110877,
29110992-29111038,29111165-29111430,29111443-29111845,
29111992-29112376
Length = 931
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -2
Query: 345 CKVDNGVDITFSLCLCEFLFSNV*IVDISRVMFAVMKTHDFTAND 211
C VD V + + CEF V + DISR++F K +F ND
Sbjct: 108 CTVDGHVKL-YRSPFCEFCDEWVEVADISRLLFKFYKGIEFGEND 151
>05_01_0355 -
2774217-2774318,2774608-2774775,2774872-2775090,
2775176-2775319,2775485-2775767,2775874-2775929,
2776012-2776161,2776254-2776340,2776414-2776449,
2777100-2777162,2777247-2777327,2777407-2777496,
2777690-2777767,2777855-2778058,2778139-2778186,
2778262-2778447,2779879-2779978,2780121-2780260
Length = 744
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -2
Query: 783 WFNRFF*NYSLERFFISXRYIIPI 712
W +RFF + L+R+FIS R +IP+
Sbjct: 110 WLSRFF--FYLDRYFISRRSLIPL 131
>12_01_0485 - 3848721-3849227,3852019-3852369
Length = 285
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +3
Query: 534 AWLQQTNEEIANSYMPEPGSSAGHH-WIGPALR 629
AW E I + PG+ AG+H W+GP R
Sbjct: 134 AWKSWLEEHITATGKAPPGNVAGNHTWVGPPQR 166
>06_01_0286 - 2094920-2097805
Length = 961
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +1
Query: 169 TLPXLPYXYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAKGDIDTII 336
+L L +N L +I + SLH H NNL+ + +Q Q GD D I
Sbjct: 807 SLESLDLSWNRLSGIIPESMTSLHLLSHLNMSYNNLSGMVPQGSQLQTLGDEDPYI 862
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,700,778
Number of Sequences: 37544
Number of extensions: 473189
Number of successful extensions: 1330
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1325
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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