Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_D08
         (547 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M21045-2|AAA28853.1|  151|Drosophila melanogaster protein ( D.me...   204   6e-53
M21045-1|AAA28852.1|  151|Drosophila melanogaster protein ( D.me...   204   6e-53
AY071321-1|AAL48943.1|  151|Drosophila melanogaster RE34379p pro...   204   6e-53
AE014298-1091|AAF46299.1|  151|Drosophila melanogaster CG1527-PA...   204   6e-53
AE014298-1090|AAF46297.1|  151|Drosophila melanogaster CG1524-PB...   204   6e-53
AE014298-1089|AAF46298.1|  151|Drosophila melanogaster CG1524-PA...   204   6e-53
AY070665-1|AAL48136.1|  123|Drosophila melanogaster RH04612p pro...   128   5e-30
Z28622-1|CAA82262.1| 1293|Drosophila melanogaster xeroderma pigm...    28   7.2  
AY070566-1|AAL48037.1| 1293|Drosophila melanogaster LD47533p pro...    28   7.2  
AF209743-1|AAF24766.1| 1293|Drosophila melanogaster XPC-like pro...    28   7.2  
AE013599-2037|AAF58150.1| 1293|Drosophila melanogaster CG8153-PA...    28   7.2  

>M21045-2|AAA28853.1|  151|Drosophila melanogaster protein (
           D.melanogaster ribosomalprotein S14 A and B genes,
           complete cds. ).
          Length = 151

 Score =  204 bits (498), Expect = 6e-53
 Identities = 107/139 (76%), Positives = 109/139 (78%)
 Frame = +3

Query: 45  PRVKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMK 224
           PR K KV KEEVQV LGPQ   GE VFGVAHI+ASFNDTFVHVTDLSGRETIARVTGGMK
Sbjct: 3   PR-KAKVQKEEVQVQLGPQVRDGEIVFGVAHIYASFNDTFVHVTDLSGRETIARVTGGMK 61

Query: 225 VKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXX 404
           VKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRA            AQ        
Sbjct: 62  VKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNKTKTPGPGAQSALRALAR 121

Query: 405 XXMKIGRIEDVTPVPSDST 461
             MKIGRIEDVTP+PSDST
Sbjct: 122 SSMKIGRIEDVTPIPSDST 140


>M21045-1|AAA28852.1|  151|Drosophila melanogaster protein (
           D.melanogaster ribosomalprotein S14 A and B genes,
           complete cds. ).
          Length = 151

 Score =  204 bits (498), Expect = 6e-53
 Identities = 107/139 (76%), Positives = 109/139 (78%)
 Frame = +3

Query: 45  PRVKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMK 224
           PR K KV KEEVQV LGPQ   GE VFGVAHI+ASFNDTFVHVTDLSGRETIARVTGGMK
Sbjct: 3   PR-KAKVQKEEVQVQLGPQVRDGEIVFGVAHIYASFNDTFVHVTDLSGRETIARVTGGMK 61

Query: 225 VKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXX 404
           VKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRA            AQ        
Sbjct: 62  VKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNKTKTPGPGAQSALRALAR 121

Query: 405 XXMKIGRIEDVTPVPSDST 461
             MKIGRIEDVTP+PSDST
Sbjct: 122 SSMKIGRIEDVTPIPSDST 140


>AY071321-1|AAL48943.1|  151|Drosophila melanogaster RE34379p
           protein.
          Length = 151

 Score =  204 bits (498), Expect = 6e-53
 Identities = 107/139 (76%), Positives = 109/139 (78%)
 Frame = +3

Query: 45  PRVKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMK 224
           PR K KV KEEVQV LGPQ   GE VFGVAHI+ASFNDTFVHVTDLSGRETIARVTGGMK
Sbjct: 3   PR-KAKVQKEEVQVQLGPQVRDGEIVFGVAHIYASFNDTFVHVTDLSGRETIARVTGGMK 61

Query: 225 VKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXX 404
           VKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRA            AQ        
Sbjct: 62  VKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNKTKTPGPGAQSALRALAR 121

Query: 405 XXMKIGRIEDVTPVPSDST 461
             MKIGRIEDVTP+PSDST
Sbjct: 122 SSMKIGRIEDVTPIPSDST 140


>AE014298-1091|AAF46299.1|  151|Drosophila melanogaster CG1527-PA
           protein.
          Length = 151

 Score =  204 bits (498), Expect = 6e-53
 Identities = 107/139 (76%), Positives = 109/139 (78%)
 Frame = +3

Query: 45  PRVKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMK 224
           PR K KV KEEVQV LGPQ   GE VFGVAHI+ASFNDTFVHVTDLSGRETIARVTGGMK
Sbjct: 3   PR-KAKVQKEEVQVQLGPQVRDGEIVFGVAHIYASFNDTFVHVTDLSGRETIARVTGGMK 61

Query: 225 VKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXX 404
           VKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRA            AQ        
Sbjct: 62  VKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNKTKTPGPGAQSALRALAR 121

Query: 405 XXMKIGRIEDVTPVPSDST 461
             MKIGRIEDVTP+PSDST
Sbjct: 122 SSMKIGRIEDVTPIPSDST 140


>AE014298-1090|AAF46297.1|  151|Drosophila melanogaster CG1524-PB,
           isoform B protein.
          Length = 151

 Score =  204 bits (498), Expect = 6e-53
 Identities = 107/139 (76%), Positives = 109/139 (78%)
 Frame = +3

Query: 45  PRVKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMK 224
           PR K KV KEEVQV LGPQ   GE VFGVAHI+ASFNDTFVHVTDLSGRETIARVTGGMK
Sbjct: 3   PR-KAKVQKEEVQVQLGPQVRDGEIVFGVAHIYASFNDTFVHVTDLSGRETIARVTGGMK 61

Query: 225 VKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXX 404
           VKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRA            AQ        
Sbjct: 62  VKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNKTKTPGPGAQSALRALAR 121

Query: 405 XXMKIGRIEDVTPVPSDST 461
             MKIGRIEDVTP+PSDST
Sbjct: 122 SSMKIGRIEDVTPIPSDST 140


>AE014298-1089|AAF46298.1|  151|Drosophila melanogaster CG1524-PA,
           isoform A protein.
          Length = 151

 Score =  204 bits (498), Expect = 6e-53
 Identities = 107/139 (76%), Positives = 109/139 (78%)
 Frame = +3

Query: 45  PRVKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMK 224
           PR K KV KEEVQV LGPQ   GE VFGVAHI+ASFNDTFVHVTDLSGRETIARVTGGMK
Sbjct: 3   PR-KAKVQKEEVQVQLGPQVRDGEIVFGVAHIYASFNDTFVHVTDLSGRETIARVTGGMK 61

Query: 225 VKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXX 404
           VKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRA            AQ        
Sbjct: 62  VKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNKTKTPGPGAQSALRALAR 121

Query: 405 XXMKIGRIEDVTPVPSDST 461
             MKIGRIEDVTP+PSDST
Sbjct: 122 SSMKIGRIEDVTPIPSDST 140


>AY070665-1|AAL48136.1|  123|Drosophila melanogaster RH04612p
           protein.
          Length = 123

 Score =  128 bits (309), Expect = 5e-30
 Identities = 65/74 (87%), Positives = 66/74 (89%)
 Frame = +3

Query: 45  PRVKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMK 224
           PR K KV KEEVQV LGPQ   GE VFGVAHI+ASFNDTFVHVTDLSGRETIARVTGGMK
Sbjct: 3   PR-KAKVQKEEVQVQLGPQVRDGEIVFGVAHIYASFNDTFVHVTDLSGRETIARVTGGMK 61

Query: 225 VKADRDEASPYAAM 266
           VKADRDEASPYAAM
Sbjct: 62  VKADRDEASPYAAM 75


>Z28622-1|CAA82262.1| 1293|Drosophila melanogaster xeroderma
           pigmentosum group Ccomplementing factor protein.
          Length = 1293

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 8   DFDSSQAKG*AMAPSXKQSC*RGGPGDPRAPA 103
           DFD  QA+G A   S + S   G  GD +AP+
Sbjct: 38  DFDELQAEGGAAGSSGRSSAVAGKRGDHKAPS 69


>AY070566-1|AAL48037.1| 1293|Drosophila melanogaster LD47533p
           protein.
          Length = 1293

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 8   DFDSSQAKG*AMAPSXKQSC*RGGPGDPRAPA 103
           DFD  QA+G A   S + S   G  GD +AP+
Sbjct: 38  DFDELQAEGGAAGSSGRSSAVAGKRGDHKAPS 69


>AF209743-1|AAF24766.1| 1293|Drosophila melanogaster XPC-like
           protein isoform a protein.
          Length = 1293

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 8   DFDSSQAKG*AMAPSXKQSC*RGGPGDPRAPA 103
           DFD  QA+G A   S + S   G  GD +AP+
Sbjct: 38  DFDELQAEGGAAGSSGRSSAVAGKRGDHKAPS 69


>AE013599-2037|AAF58150.1| 1293|Drosophila melanogaster CG8153-PA,
           isoform A protein.
          Length = 1293

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 8   DFDSSQAKG*AMAPSXKQSC*RGGPGDPRAPA 103
           DFD  QA+G A   S + S   G  GD +AP+
Sbjct: 38  DFDELQAEGGAAGSSGRSSAVAGKRGDHKAPS 69


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,057,102
Number of Sequences: 53049
Number of extensions: 547928
Number of successful extensions: 1332
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1332
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2069139900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)