Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_D05
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces ...    27   3.4  
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom...    27   3.4  
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    26   5.9  

>SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 461

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +2

Query: 422 EQHNITLFSLREGLDRANIMLDRKSLSDLASWEPKTFEALAAVAKYKLETDR 577
           + H+I+  ++R   +R N  LD+ S+SDL S  P   E ++ V  Y+   ++
Sbjct: 387 QTHHISGSAVRMAEER-NTTLDKLSVSDLQSLHPLFDEDVSKVFNYEESVEK 437


>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 558

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -2

Query: 616 YSCGVTFILSIYESVCFKFVFSYSSEGFECFW 521
           YSC   + L +  S   +FVFS  S G  CFW
Sbjct: 483 YSCS-GYSLEVGFSPDGRFVFSGDSSGNACFW 513


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
 Frame = +2

Query: 380 DMKSLWDVRITAACEQHNITLFSLREG------LDRANIMLDRKSLSDLASWEPKTFEA 538
           D K+L D++     E++ I  FSLR+G      +++ N  L  + ++   SWE   F++
Sbjct: 151 DSKTLTDLKKRKLVERNKIMYFSLRKGPNFSLQIEKLNTDLTAEMITS-RSWESAKFKS 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,720,871
Number of Sequences: 5004
Number of extensions: 53858
Number of successful extensions: 116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)