Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_D05
(689 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC059945-1|AAH59945.1| 149|Homo sapiens MRPL20 protein protein. 113 7e-25
BC014316-1|AAH14316.1| 149|Homo sapiens mitochondrial ribosomal... 113 7e-25
BC009515-1|AAH09515.1| 149|Homo sapiens mitochondrial ribosomal... 113 7e-25
AL391244-3|CAI22658.1| 149|Homo sapiens mitochondrial ribosomal... 113 7e-25
AB049644-1|BAB40849.1| 149|Homo sapiens mitochondrial ribosomal... 113 7e-25
AK000886-1|BAA91406.1| 148|Homo sapiens protein ( Homo sapiens ... 65 3e-10
AF435925-1|AAL30811.1| 6307|Homo sapiens very large G protein-co... 31 5.1
>BC059945-1|AAH59945.1| 149|Homo sapiens MRPL20 protein protein.
Length = 149
Score = 113 bits (271), Expect = 7e-25
Identities = 57/120 (47%), Positives = 81/120 (67%)
Frame = +2
Query: 194 MVFLSVINWARCRGPDEFWRKRRVFRLAAHYIGRRRNCYSIAVRNVHRALVYATKARKLK 373
MVFL+ W R R D ++R + V + A H+ GR+ CY +AVR V RA V TKAR LK
Sbjct: 1 MVFLTAQLWLRNRVTDRYFRIQEVLKHARHFRGRKNRCYRLAVRTVIRAFVKCTKARYLK 60
Query: 374 KEDMKSLWDVRITAACEQHNITLFSLREGLDRANIMLDRKSLSDLASWEPKTFEALAAVA 553
K++M++LW RITAA ++H + +L L + + L+RK L+DLA +EPKTF++LAA+A
Sbjct: 61 KKNMRTLWINRITAASQEHGLKYPALIGNLVKCQVELNRKVLADLAIYEPKTFKSLAALA 120
>BC014316-1|AAH14316.1| 149|Homo sapiens mitochondrial ribosomal
protein L20 protein.
Length = 149
Score = 113 bits (271), Expect = 7e-25
Identities = 57/120 (47%), Positives = 81/120 (67%)
Frame = +2
Query: 194 MVFLSVINWARCRGPDEFWRKRRVFRLAAHYIGRRRNCYSIAVRNVHRALVYATKARKLK 373
MVFL+ W R R D ++R + V + A H+ GR+ CY +AVR V RA V TKAR LK
Sbjct: 1 MVFLTAQLWLRNRVTDRYFRIQEVLKHARHFRGRKNRCYRLAVRTVIRAFVKCTKARYLK 60
Query: 374 KEDMKSLWDVRITAACEQHNITLFSLREGLDRANIMLDRKSLSDLASWEPKTFEALAAVA 553
K++M++LW RITAA ++H + +L L + + L+RK L+DLA +EPKTF++LAA+A
Sbjct: 61 KKNMRTLWINRITAASQEHGLKYPALIGNLVKCQVELNRKVLADLAIYEPKTFKSLAALA 120
>BC009515-1|AAH09515.1| 149|Homo sapiens mitochondrial ribosomal
protein L20 protein.
Length = 149
Score = 113 bits (271), Expect = 7e-25
Identities = 57/120 (47%), Positives = 81/120 (67%)
Frame = +2
Query: 194 MVFLSVINWARCRGPDEFWRKRRVFRLAAHYIGRRRNCYSIAVRNVHRALVYATKARKLK 373
MVFL+ W R R D ++R + V + A H+ GR+ CY +AVR V RA V TKAR LK
Sbjct: 1 MVFLTAQLWLRNRVTDRYFRIQEVLKHARHFRGRKNRCYRLAVRTVIRAFVKCTKARYLK 60
Query: 374 KEDMKSLWDVRITAACEQHNITLFSLREGLDRANIMLDRKSLSDLASWEPKTFEALAAVA 553
K++M++LW RITAA ++H + +L L + + L+RK L+DLA +EPKTF++LAA+A
Sbjct: 61 KKNMRTLWINRITAASQEHGLKYPALIGNLVKCQVELNRKVLADLAIYEPKTFKSLAALA 120
>AL391244-3|CAI22658.1| 149|Homo sapiens mitochondrial ribosomal
protein L20 protein.
Length = 149
Score = 113 bits (271), Expect = 7e-25
Identities = 57/120 (47%), Positives = 81/120 (67%)
Frame = +2
Query: 194 MVFLSVINWARCRGPDEFWRKRRVFRLAAHYIGRRRNCYSIAVRNVHRALVYATKARKLK 373
MVFL+ W R R D ++R + V + A H+ GR+ CY +AVR V RA V TKAR LK
Sbjct: 1 MVFLTAQLWLRNRVTDRYFRIQEVLKHARHFRGRKNRCYRLAVRTVIRAFVKCTKARYLK 60
Query: 374 KEDMKSLWDVRITAACEQHNITLFSLREGLDRANIMLDRKSLSDLASWEPKTFEALAAVA 553
K++M++LW RITAA ++H + +L L + + L+RK L+DLA +EPKTF++LAA+A
Sbjct: 61 KKNMRTLWINRITAASQEHGLKYPALIGNLVKCQVELNRKVLADLAIYEPKTFKSLAALA 120
>AB049644-1|BAB40849.1| 149|Homo sapiens mitochondrial ribosomal
protein L20 (L20mt) protein.
Length = 149
Score = 113 bits (271), Expect = 7e-25
Identities = 57/120 (47%), Positives = 81/120 (67%)
Frame = +2
Query: 194 MVFLSVINWARCRGPDEFWRKRRVFRLAAHYIGRRRNCYSIAVRNVHRALVYATKARKLK 373
MVFL+ W R R D ++R + V + A H+ GR+ CY +AVR V RA V TKAR LK
Sbjct: 1 MVFLTAQLWLRNRVTDRYFRIQEVLKHARHFRGRKNRCYRLAVRTVIRAFVKCTKARYLK 60
Query: 374 KEDMKSLWDVRITAACEQHNITLFSLREGLDRANIMLDRKSLSDLASWEPKTFEALAAVA 553
K++M++LW RITAA ++H + +L L + + L+RK L+DLA +EPKTF++LAA+A
Sbjct: 61 KKNMRTLWINRITAASQEHGLKYPALIGNLVKCQVELNRKVLADLAIYEPKTFKSLAALA 120
>AK000886-1|BAA91406.1| 148|Homo sapiens protein ( Homo sapiens
cDNA FLJ10024 fis, clone HEMBA1000636. ).
Length = 148
Score = 64.9 bits (151), Expect = 3e-10
Identities = 31/67 (46%), Positives = 44/67 (65%)
Frame = +2
Query: 194 MVFLSVINWARCRGPDEFWRKRRVFRLAAHYIGRRRNCYSIAVRNVHRALVYATKARKLK 373
MVFL+ W R R D ++R + V + A H+ GR+ CY +AVR V RA V TKAR LK
Sbjct: 1 MVFLTAQLWLRNRVTDRYFRIQEVLKHARHFWGRKNRCYRLAVRTVIRAFVKCTKARYLK 60
Query: 374 KEDMKSL 394
K++M+++
Sbjct: 61 KKNMRTV 67
>AF435925-1|AAL30811.1| 6307|Homo sapiens very large G protein-coupled
receptor 1b protein.
Length = 6307
Score = 30.7 bits (66), Expect = 5.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -2
Query: 643 NINILKV*IYSCGVTFILSIYESVCFKFVFSYSSEGFECFW 521
N++ + +Y+C L + E C F F +SEG +CFW
Sbjct: 2428 NVSAVGEPLYTCAT---LCLKEQACSAFSFFSASEGPQCFW 2465
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,340,783
Number of Sequences: 237096
Number of extensions: 1788944
Number of successful extensions: 2776
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2776
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7895240574
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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