Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_D05
         (689 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117203-7|CAB55109.1|  191|Caenorhabditis elegans Hypothetical ...    53   2e-07
U41296-1|AAA93297.1|  579|Caenorhabditis elegans Steroid hormone...    29   3.1  
AY204170-1|AAO39174.1|  579|Caenorhabditis elegans nuclear recep...    29   3.1  
AF067936-1|AAC19212.2|  579|Caenorhabditis elegans Nuclear hormo...    29   3.1  
AF026213-6|AAB71307.1|  655|Caenorhabditis elegans Temporarily a...    28   5.5  
AL031630-16|CAA20996.1|  158|Caenorhabditis elegans Hypothetical...    27   9.6  

>AL117203-7|CAB55109.1|  191|Caenorhabditis elegans Hypothetical
           protein Y48C3A.10 protein.
          Length = 191

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 30/107 (28%), Positives = 53/107 (49%)
 Frame = +2

Query: 236 PDEFWRKRRVFRLAAHYIGRRRNCYSIAVRNVHRALVYATKARKLKKEDMKSLWDVRITA 415
           PD + ++ R+ R  A      R+    A R   +   Y    R+ ++   K   + R+  
Sbjct: 26  PDVWMKRERLNRFTAWQYASERSTVKGAYRKEDKIFAYLNMQRQDERNLEKFHAEERVRT 85

Query: 416 ACEQHNITLFSLREGLDRANIMLDRKSLSDLASWEPKTFEALAAVAK 556
           A E+H++     +  L +++I+LD   LS LA +EP++F +L A AK
Sbjct: 86  ALEEHDMEYSKFKSILSQSHILLDNICLSQLAIYEPRSFRSLVAFAK 132


>U41296-1|AAA93297.1|  579|Caenorhabditis elegans Steroid hormone
           receptor-like proteinprotein.
          Length = 579

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +2

Query: 500 SDLASWEPKTFEALAAVAKYKLETDRFIDGQDKC--HPTGINLNLKDVYVRGMVE 658
           +D ASW P+ +    A  + K +   F + +D C   P+  NLN + +    M+E
Sbjct: 362 ADYASWIPQDYGHPTAGHEGKSDMHNFFEARDFCVGRPSSCNLNERSMKTVSMLE 416


>AY204170-1|AAO39174.1|  579|Caenorhabditis elegans nuclear receptor
           NHR-47 protein.
          Length = 579

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +2

Query: 500 SDLASWEPKTFEALAAVAKYKLETDRFIDGQDKC--HPTGINLNLKDVYVRGMVE 658
           +D ASW P+ +    A  + K +   F + +D C   P+  NLN + +    M+E
Sbjct: 362 ADYASWIPQDYGHPTAGHEGKSDMHNFFEARDFCVGRPSSCNLNERSMKTVSMLE 416


>AF067936-1|AAC19212.2|  579|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 47 protein.
          Length = 579

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +2

Query: 500 SDLASWEPKTFEALAAVAKYKLETDRFIDGQDKC--HPTGINLNLKDVYVRGMVE 658
           +D ASW P+ +    A  + K +   F + +D C   P+  NLN + +    M+E
Sbjct: 362 ADYASWIPQDYGHPTAGHEGKSDMHNFFEARDFCVGRPSSCNLNERSMKTVSMLE 416


>AF026213-6|AAB71307.1|  655|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 123 protein.
          Length = 655

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 26  WCSPTQFLXSSLTVSXHXNFRWFXIFNSLNKILFV 130
           W S   ++  S+    H N +WF I NSL  +LF+
Sbjct: 275 WSSRWDYILQSMP---HTNIQWFSIMNSLVIVLFL 306


>AL031630-16|CAA20996.1|  158|Caenorhabditis elegans Hypothetical
           protein Y38H6C.18 protein.
          Length = 158

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 278 AHYIGRRRNCYSIAVRNVHRALVYATKARKLKKEDMKS 391
           AHY  R R   SI V    + +    + RK+ K+DM+S
Sbjct: 76  AHYRARARMQLSIEVSKKMQEITKEKRIRKMAKKDMRS 113


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,011,147
Number of Sequences: 27780
Number of extensions: 299528
Number of successful extensions: 725
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)