Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_D04
         (434 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0186 + 21027581-21028825                                         28   2.9  
11_06_0288 - 21962546-21962977,21963041-21963211,21963411-21963788     27   6.6  
10_07_0045 + 12328388-12328419,12328504-12328645,12328862-123290...    27   8.7  

>11_06_0186 + 21027581-21028825
          Length = 414

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/35 (37%), Positives = 14/35 (40%)
 Frame = +2

Query: 80  KDCSGGCRAIVDIN*TPNRTNHIYKVSLWGRAPAP 184
           K C  GCR I   N   N    I  + LW   P P
Sbjct: 363 KGCKNGCRDIGVFNLENNCAEEIVSLQLWSNWPPP 397


>11_06_0288 - 21962546-21962977,21963041-21963211,21963411-21963788
          Length = 326

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = +2

Query: 80  KDCSGGCRAIVDIN*TPNRTNHIYKVSLWGRAPAP 184
           K C  GCR I   N   N    I    LW   P P
Sbjct: 275 KGCKNGCRDIGVFNLENNCAEEIVSPQLWSNWPPP 309


>10_07_0045 +
           12328388-12328419,12328504-12328645,12328862-12329054,
           12329224-12329320,12329404-12329528,12329616-12329734,
           12331225-12331298,12331359-12331413,12331450-12331500,
           12331611-12331857,12331940-12332036,12332170-12332244,
           12334286-12334488,12334757-12334905,12334995-12335168,
           12335276-12335401,12335493-12335623,12335743-12335818,
           12335898-12336027,12336115-12336193,12336267-12336465,
           12336591-12336698,12336769-12337025,12337267-12337282
          Length = 984

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 321 Y*LTNETIFVIMILNTLVENCTFL 392
           Y LTNE +  I ++    ENCT +
Sbjct: 505 YELTNEDVMAIFLIEDSAENCTLV 528


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,907,178
Number of Sequences: 37544
Number of extensions: 131898
Number of successful extensions: 178
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)