Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_D03
         (719 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ007394-1|CAA07489.1|  112|Anopheles gambiae mucin protein.           26   1.0  
AF046924-1|AAC08530.1|  122|Anopheles gambiae mucin protein.           26   1.0  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    24   5.4  

>AJ007394-1|CAA07489.1|  112|Anopheles gambiae mucin protein.
          Length = 112

 Score = 26.2 bits (55), Expect = 1.0
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 640 SMRPILSPVAPCTSAVSPLNLAQIAPTVFVSLS 542
           ++ P  + VAP T+ V+P     +APT   +++
Sbjct: 28  TVAPATTTVAPTTTTVAPTTTTTVAPTTTTTVA 60


>AF046924-1|AAC08530.1|  122|Anopheles gambiae mucin protein.
          Length = 122

 Score = 26.2 bits (55), Expect = 1.0
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 640 SMRPILSPVAPCTSAVSPLNLAQIAPTVFVSLS 542
           ++ P  + VAP T+ V+P     +APT   +++
Sbjct: 28  TVAPATTTVAPTTTTVAPTTTTTVAPTTTTTVA 60


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 23.8 bits (49), Expect = 5.4
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 419 RGCWYIHVSTKYNLYKRWLENDNSTKTSIFCIFVETGNRVF 541
           RG  Y  ++  Y  Y   +EN N  K+    + V  GNR+F
Sbjct: 522 RGREYADIANAY--YGPVIENFNCDKSIYTAVEVTAGNRLF 560


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 692,600
Number of Sequences: 2352
Number of extensions: 13009
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 73181328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)