Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_C24
(703 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 291 3e-79
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 283 1e-76
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 272 2e-73
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 31 0.89
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 30 2.0
07_03_1509 - 27246721-27247350 29 3.6
01_06_0212 + 27575406-27575604,27575723-27576241,27576371-27576387 28 6.2
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 291 bits (715), Expect = 3e-79
Identities = 132/181 (72%), Positives = 150/181 (82%)
Frame = +3
Query: 156 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 335
MGRRPARCYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENV 60
Query: 336 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLXTGMRGAFG 515
SSEALEA RI CNKY+ KN GKD FH+R+R+HPFHV+RINKMLSCAGADRL TGMRGAFG
Sbjct: 61 SSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 516 KPQGTVXRVRIGQPIMSVRSXDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDE 695
KPQGT RV IGQ ++SVR + EALRRAKFKFPGRQKI S+KWGFTK+ R+E
Sbjct: 121 KPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREE 180
Query: 696 F 698
+
Sbjct: 181 Y 181
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 283 bits (693), Expect = 1e-76
Identities = 126/177 (71%), Positives = 146/177 (82%)
Frame = +3
Query: 168 PARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEA 347
P RCYR KNKPYPKSR+CRGVPDPKIRIFD+G+K+ + DDFPLCVHLVS E E +SSEA
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEA 371
Query: 348 LEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLXTGMRGAFGKPQG 527
LEA RI CNKY+ K+ GKD FH+R+ HP+HV+RINKMLSCAGADRL TGMRGAFGKP G
Sbjct: 372 LEAARIACNKYMAKHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTG 431
Query: 528 TVXRVRIGQPIMSVRSXDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEF 698
T RVRIGQ ++SVR D A EALRRAKFKFPGRQ++ S KWGFT+++RDE+
Sbjct: 432 TCARVRIGQVLLSVRCRDANAAHAQEALRRAKFKFPGRQRVIFSAKWGFTRFKRDEY 488
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 272 bits (666), Expect = 2e-73
Identities = 123/174 (70%), Positives = 141/174 (81%)
Frame = +3
Query: 177 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 356
CYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+F CVHLVS E E ++SEALEA
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEA 63
Query: 357 GRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLXTGMRGAFGKPQGTVX 536
RI CNKY+ K+ GKD FH+R+R+HPFHV+RINKMLSCAGADRL TGMRGAFGKPQGT
Sbjct: 64 ARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCA 123
Query: 537 RVRIGQPIMSVRSXDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEF 698
RV IGQ ++SVR EALRRAKFKFPGRQKI S+KWGFTK+ RDE+
Sbjct: 124 RVDIGQVLLSVRCKPNNAVHASEALRRAKFKFPGRQKIIESRKWGFTKFSRDEY 177
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 31.1 bits (67), Expect = 0.89
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 279 TVDDFPLC-VHLVSDEYEQLSSEALEAGRICCNKYLVKNCG 398
T D P C +HL SD Y S E ++AG+ C L K G
Sbjct: 587 TTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQKELG 627
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = -1
Query: 559 MGCPMRTRXTVP*GLPNAPRIPVWSLSAPAH 467
+ CP+ + VP LP++P P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655
>07_03_1509 - 27246721-27247350
Length = 209
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Frame = +1
Query: 547 LDSPSCPCALXTGGRHRSSRL---CAVP--SSSSPDVKRSTYQRSGVS 675
L P PC RH RL +P +SSSP+++R+T R+G S
Sbjct: 132 LQPPLSPCLSAGRRRHHLPRLHDAALIPGITSSSPELRRNTVARAGFS 179
>01_06_0212 + 27575406-27575604,27575723-27576241,27576371-27576387
Length = 244
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -3
Query: 644 LTSGELELGTAQSLDDLCLPPVXRAHGHDGLSNANTXYSTLRLAKRTTHP 495
L+SGEL +G + D+ LPPV G G S+A S + +R P
Sbjct: 134 LSSGELLIGASSPYDEPPLPPVHSRRG-AGRSSAVPRLSAPDIGRRYYEP 182
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,185,048
Number of Sequences: 37544
Number of extensions: 450181
Number of successful extensions: 1165
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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