Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_C23
         (478 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   1.7  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   5.1  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   6.8  
AY078399-1|AAL83702.1|   31|Apis mellifera major royal jelly pro...    21   9.0  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   9.0  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 114 LYVCVGIGCGGAVFYTLR 167
           L VC+GI C G    T+R
Sbjct: 7   LVVCLGIACQGITSVTVR 24


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 142 PHPIPTHTYRGIKALCFFKLERLSPCILNYLIAL 41
           P+P  T+  R  +   F+    + PCIL   +AL
Sbjct: 199 PYPDITYEIRLRRRPMFYVFNLILPCILINSVAL 232


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +2

Query: 299 QILNCFSNIDQLYY 340
           Q+ +CF  +D+LY+
Sbjct: 49  QLHSCFQTMDRLYF 62


>AY078399-1|AAL83702.1|   31|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 31

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 114 LYVCVGIGCGGAV 152
           +  C+GI C GA+
Sbjct: 7   MVACLGIACQGAI 19


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 114 LYVCVGIGCGGAV 152
           +  C+GI C GA+
Sbjct: 7   MVACLGIACQGAI 19


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,845
Number of Sequences: 438
Number of extensions: 2922
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)