Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_C22
(805 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
J05262-1|AAA52423.1| 353|Homo sapiens FDPS protein. 118 2e-26
D14697-1|BAA03523.2| 420|Homo sapiens KIAA1293 protein. 118 2e-26
BC010004-1|AAH10004.1| 419|Homo sapiens farnesyl diphosphate sy... 118 2e-26
AL139410-1|CAI12715.1| 419|Homo sapiens farnesyl diphosphate sy... 118 2e-26
M29863-1|AAA35820.1| 346|Homo sapiens protein ( Human farnesyl ... 117 4e-26
Z47055-1|CAA87327.1| 348|Homo sapiens farnesyl pyrophosphate sy... 109 1e-23
BC050292-1|AAH50292.1| 298|Homo sapiens LOC619190 protein protein. 91 4e-18
AL139333-5|CAI15284.1| 2369|Homo sapiens dopey family member 1 p... 38 0.056
AL139333-4|CAM21599.1| 2465|Homo sapiens dopey family member 1 p... 38 0.056
AL121716-2|CAI42426.1| 2369|Homo sapiens dopey family member 1 p... 38 0.056
AL121716-1|CAI42425.2| 2465|Homo sapiens dopey family member 1 p... 38 0.056
>J05262-1|AAA52423.1| 353|Homo sapiens FDPS protein.
Length = 353
Score = 118 bits (284), Expect = 2e-26
Identities = 53/125 (42%), Positives = 81/125 (64%), Gaps = 3/125 (2%)
Frame = +3
Query: 438 PQIGDW---LKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMF 608
P+IGD LK++L YN +GGK+ RG+T V++++ + +P K +L+ A +GWCVE+
Sbjct: 36 PEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELL 95
Query: 609 QAYCIVLDDIMDGSSVRRGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTNFRTNPNYM 788
QA+ +V DDIMD S RRG CWY++P VG+ A ND+ L+ + ++ LK R P Y+
Sbjct: 96 QAFFLVADDIMDSSLTRRGQTCWYQKPGVGLD-AINDANLLEACIYRLLKLYCREQPYYL 154
Query: 789 KMFXL 803
+ L
Sbjct: 155 NLIEL 159
>D14697-1|BAA03523.2| 420|Homo sapiens KIAA1293 protein.
Length = 420
Score = 118 bits (284), Expect = 2e-26
Identities = 61/175 (34%), Positives = 99/175 (56%), Gaps = 3/175 (1%)
Frame = +3
Query: 288 WPQLIRYKNNSANMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQIGDW---L 458
W + R +S M + EK+ F +++ L + ++ P+IGD L
Sbjct: 55 WTEEPRALCSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVL-TEDEMGH-PEIGDAIARL 112
Query: 459 KKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLDDI 638
K++L YN +GGK+ RG+T V++++ + +P K +L+ A +GWCVE+ QA+ +V DDI
Sbjct: 113 KEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDI 172
Query: 639 MDGSSVRRGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTNFRTNPNYMKMFXL 803
MD S RRG CWY++P VG+ A ND+ L+ + ++ LK R P Y+ + L
Sbjct: 173 MDSSLTRRGQICWYQKPGVGLD-AINDANLLEACIYRLLKLYCREQPYYLNLIEL 226
>BC010004-1|AAH10004.1| 419|Homo sapiens farnesyl diphosphate
synthase (farnesyl pyrophosphate synthetase,
dimethylallyl protein.
Length = 419
Score = 118 bits (284), Expect = 2e-26
Identities = 61/175 (34%), Positives = 99/175 (56%), Gaps = 3/175 (1%)
Frame = +3
Query: 288 WPQLIRYKNNSANMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQIGDW---L 458
W + R +S M + EK+ F +++ L + ++ P+IGD L
Sbjct: 54 WTEEPRALCSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVL-TEDEMGH-PEIGDAIARL 111
Query: 459 KKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLDDI 638
K++L YN +GGK+ RG+T V++++ + +P K +L+ A +GWCVE+ QA+ +V DDI
Sbjct: 112 KEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDI 171
Query: 639 MDGSSVRRGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTNFRTNPNYMKMFXL 803
MD S RRG CWY++P VG+ A ND+ L+ + ++ LK R P Y+ + L
Sbjct: 172 MDSSLTRRGQICWYQKPGVGLD-AINDANLLEACIYRLLKLYCREQPYYLNLIEL 225
>AL139410-1|CAI12715.1| 419|Homo sapiens farnesyl diphosphate
synthase (farnesyl pyrophosphate synthetase,
dimethylallyl protein.
Length = 419
Score = 118 bits (284), Expect = 2e-26
Identities = 61/175 (34%), Positives = 99/175 (56%), Gaps = 3/175 (1%)
Frame = +3
Query: 288 WPQLIRYKNNSANMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQIGDW---L 458
W + R +S M + EK+ F +++ L + ++ P+IGD L
Sbjct: 54 WTEEPRALCSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVL-TEDEMGH-PEIGDAIARL 111
Query: 459 KKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLDDI 638
K++L YN +GGK+ RG+T V++++ + +P K +L+ A +GWCVE+ QA+ +V DDI
Sbjct: 112 KEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDI 171
Query: 639 MDGSSVRRGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTNFRTNPNYMKMFXL 803
MD S RRG CWY++P VG+ A ND+ L+ + ++ LK R P Y+ + L
Sbjct: 172 MDSSLTRRGQICWYQKPGVGLD-AINDANLLEACIYRLLKLYCREQPYYLNLIEL 225
>M29863-1|AAA35820.1| 346|Homo sapiens protein ( Human farnesyl
pyrophosphate synthetase mRNA (hpt807), 3' end. ).
Length = 346
Score = 117 bits (282), Expect = 4e-26
Identities = 53/125 (42%), Positives = 81/125 (64%), Gaps = 3/125 (2%)
Frame = +3
Query: 438 PQIGDW---LKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMF 608
P+IGD LK++L YN +GGK+ RG+T V++++ + +P K +L+ A +GWCVE+
Sbjct: 29 PEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELL 88
Query: 609 QAYCIVLDDIMDGSSVRRGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTNFRTNPNYM 788
QA+ +V DDIMD S RRG CWY++P VG+ A ND+ L+ + ++ LK R P Y+
Sbjct: 89 QAFFLVADDIMDSSLTRRGQICWYQKPGVGLD-AINDANLLEACIYRLLKLYCREQPYYL 147
Query: 789 KMFXL 803
+ L
Sbjct: 148 NLIEL 152
>Z47055-1|CAA87327.1| 348|Homo sapiens farnesyl pyrophosphate
synthetase like-4 protein.
Length = 348
Score = 109 bits (262), Expect = 1e-23
Identities = 50/125 (40%), Positives = 78/125 (62%), Gaps = 3/125 (2%)
Frame = +3
Query: 438 PQIGDW---LKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMF 608
P+IGD LK++L YN +GGK+ R +T ++++ + P K +L+ A +GWCVE+
Sbjct: 31 PEIGDAIARLKEVLEYNAIGGKYNRRLTVAVAFRELVDPRKQDADSLQRAWTVGWCVELL 90
Query: 609 QAYCIVLDDIMDGSSVRRGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTNFRTNPNYM 788
QA+ +V DDIMD S RRG CWY++P VG+ A +D+ L+ + ++ LK R P Y+
Sbjct: 91 QAFFLVADDIMDSSLTRRGQICWYQKPGVGLD-AIDDANLLEACIYPLLKLYCREQPYYL 149
Query: 789 KMFXL 803
+ L
Sbjct: 150 NLIEL 154
>BC050292-1|AAH50292.1| 298|Homo sapiens LOC619190 protein protein.
Length = 298
Score = 91.1 bits (216), Expect = 4e-18
Identities = 42/125 (33%), Positives = 76/125 (60%), Gaps = 3/125 (2%)
Frame = +3
Query: 438 PQIGDW---LKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMF 608
P+ GD LK++L YN +GGK+ RG+ +++++ + +P K+ +L+ A +GW ++
Sbjct: 4 PETGDATARLKEVLEYNAIGGKYHRGLMVLVAFRELVEPRKLDADSLQWAPTVGWYAQLL 63
Query: 609 QAYCIVLDDIMDGSSVRRGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTNFRTNPNYM 788
QA+ +V DDIMD S +G WY++ +G+ A ND++L+ + ++ LK R P Y+
Sbjct: 64 QAFFLVADDIMDSSLTCQGQISWYQKLGMGLD-AINDAILLEACIYCLLKLYCREQPYYL 122
Query: 789 KMFXL 803
+ L
Sbjct: 123 NLMEL 127
>AL139333-5|CAI15284.1| 2369|Homo sapiens dopey family member 1
protein.
Length = 2369
Score = 37.5 bits (83), Expect = 0.056
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = +3
Query: 303 RYKNNSANMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQ---IGDWLKKMLH 473
+Y+N A + A KN E +E L ++ LQN +K VP+ IG L + LH
Sbjct: 13 KYRNYVAAIDKALKNFEYSSEWADLISALGKLNKVLQNNAKYQVVPKKLTIGKRLAQCLH 72
Query: 474 YNLVGGKHTRGITTV-ISYKTI 536
L GG H + + T I +K I
Sbjct: 73 PALPGGVHRKALETYEIIFKII 94
>AL139333-4|CAM21599.1| 2465|Homo sapiens dopey family member 1
protein.
Length = 2465
Score = 37.5 bits (83), Expect = 0.056
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = +3
Query: 303 RYKNNSANMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQ---IGDWLKKMLH 473
+Y+N A + A KN E +E L ++ LQN +K VP+ IG L + LH
Sbjct: 13 KYRNYVAAIDKALKNFEYSSEWADLISALGKLNKVLQNNAKYQVVPKKLTIGKRLAQCLH 72
Query: 474 YNLVGGKHTRGITTV-ISYKTI 536
L GG H + + T I +K I
Sbjct: 73 PALPGGVHRKALETYEIIFKII 94
>AL121716-2|CAI42426.1| 2369|Homo sapiens dopey family member 1
protein.
Length = 2369
Score = 37.5 bits (83), Expect = 0.056
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = +3
Query: 303 RYKNNSANMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQ---IGDWLKKMLH 473
+Y+N A + A KN E +E L ++ LQN +K VP+ IG L + LH
Sbjct: 13 KYRNYVAAIDKALKNFEYSSEWADLISALGKLNKVLQNNAKYQVVPKKLTIGKRLAQCLH 72
Query: 474 YNLVGGKHTRGITTV-ISYKTI 536
L GG H + + T I +K I
Sbjct: 73 PALPGGVHRKALETYEIIFKII 94
>AL121716-1|CAI42425.2| 2465|Homo sapiens dopey family member 1
protein.
Length = 2465
Score = 37.5 bits (83), Expect = 0.056
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = +3
Query: 303 RYKNNSANMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQ---IGDWLKKMLH 473
+Y+N A + A KN E +E L ++ LQN +K VP+ IG L + LH
Sbjct: 13 KYRNYVAAIDKALKNFEYSSEWADLISALGKLNKVLQNNAKYQVVPKKLTIGKRLAQCLH 72
Query: 474 YNLVGGKHTRGITTV-ISYKTI 536
L GG H + + T I +K I
Sbjct: 73 PALPGGVHRKALETYEIIFKII 94
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,261,203
Number of Sequences: 237096
Number of extensions: 2609800
Number of successful extensions: 4731
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4725
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9924838204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -